Manually apply more suggestions from code review

Author: andrewdnolan

e3sm_supported_machines/default.cfg

@@ -43,7 +43,7 @@ esmf = [email protected]+mpi+netcdf~pnetcdf~external-parallelio
 hdf5 = [email protected]+cxx+fortran+hl+mpi+shared
 moab = [email protected]+mpi+hdf5+netcdf+pnetcdf+metis+parmetis+tempest
 nco = [email protected]+openmp
-netcdf_c = [email protected].2+mpi~parallel-netcdf
+netcdf_c = [email protected].3+mpi~parallel-netcdf
 netcdf_fortran = [email protected]
 parallel_netcdf = [email protected]
 # parallelio = [email protected]+fortran+mpi~pnetcdf

recipes/e3sm-unified/meta.yaml

@@ -32,10 +32,9 @@ requirements:
     - python
     - r
     - cdo
-    - cime_gen_domain 6.1.59  # [linux]
     - chemdyg 1.1.0
     - e3sm_diags 3.0.0
-    - e3sm_to_cmip 1.11.3
+    - e3sm_to_cmip 1.13.0rc1
     - e3sm-tools 3.0.2  # [linux]
     - geometric_features 1.6.1
     # fixes an issues with cryptography <37 constraint
@@ -50,8 +49,7 @@ requirements:
     - mpas-analysis 1.14.0rc2
     - mpas_tools 1.4.0rc1
     - nco 5.3.5  # [mpi != 'hpc']
-    # can not be installed until dependency on genutils, cdutil, cdms2, cdp
-    # - pcmdi_metrics 3.8.2
+    - pcmdi_metrics 4.0.0
     - squadgen 1.2.2  # [linux]
     - tempest-remap 2.2.0  # [mpi != 'hpc']
     - tempest-extremes 2.4 {{ mpi_prefix }}_*  # [mpi != 'hpc']
@@ -87,13 +85,11 @@ requirements:
     - gsw
     - hdf5 1.14.6 {{ mpi_prefix }}_*
     - ipygany
-    - libnetcdf 4.9.2 {{ mpi_prefix }}_*
+    - libnetcdf 4.9.3 {{ mpi_prefix }}_*
     - lxml
-    - matplotlib-base 3.9.4
+    - matplotlib-base 3.10.6
     - metpy
     - mpi4py  # [mpi != 'nompi' and mpi != 'hpc']
-    - nb_conda
-    - nb_conda_kernels
     - ncview 2.1.8
     - ncvis-climate 2024.01.26
     - nc-time-axis