diff --git a/docs/source/SCREAMv0/DYAMOND2/simulation_data/index.rst b/docs/source/SCREAMv0/DYAMOND2/simulation_data/index.rst index 89e53b7..c0612b0 100644 --- a/docs/source/SCREAMv0/DYAMOND2/simulation_data/index.rst +++ b/docs/source/SCREAMv0/DYAMOND2/simulation_data/index.rst @@ -2,20 +2,30 @@ Simulation Data *************** -The SCREAMv0 simulation data is available on **NERSC HPSS**. -**If you have an account on NERSC**, you can retrieve the data locally or remotely using Globus. -To download simulation data locally on a NERSC machine, refer to NERSC's documentation `here `_. +Instructions +************ + +The SCREAMv0 simulation data are available on **NERSC HPSS**. + +**If you have an account on NERSC**, you can retrieve the data locally or remotely using Globus. To download simulation data locally on a NERSC machine, refer to NERSC's documentation `here `_. **If you do not have access to NERSC**, you can download simulation data directly through the NERSC HPSS `web interface `_. Note that this will be slow given the large file sizes. +Original Run Scripts +********************* + Scripts originally used to run SCREAMv0 DYAMOND2 simulations are available `here `_. +**Warning, these will not run out-of-the-box**. They are provided to give guidance for setting up a similar run. + +Table of simulation data +************************ + .. toctree:: :maxdepth: 2 - :caption: Contents: - simulation_table \ No newline at end of file + simulation_table diff --git a/docs/source/SCREAMv1/FourSeasons/simulation_data/index.rst b/docs/source/SCREAMv1/FourSeasons/simulation_data/index.rst index 273d50a..852c4cf 100644 --- a/docs/source/SCREAMv1/FourSeasons/simulation_data/index.rst +++ b/docs/source/SCREAMv1/FourSeasons/simulation_data/index.rst @@ -2,34 +2,30 @@ Simulation Data *************** -The SCREAMv1 FourSeasons simulation data is available on **NERSC HPSS**. -**If you have an account on NERSC**, you can retrieve the data locally or remotely using Globus. -To download simulation data locally on a NERSC machine: :: +Instructions +************ - zstash extract --hpss= +The SCREAMv1 FourSeasons simulation data are available on **NERSC HPSS**. -To download simulation data remotely using the zstash Globus interface: :: - - zstash extract --hpss=globus://nersc/ - -or :: - - zstash extract --hpss=globus://9cd89cfd-6d04-11e5-ba46-22000b92c6ec/ - -Note that the data management tool `zstash `_ is available from the `E3SM-Unified `_ conda environment. - -For more information, refer to `zstash usage `_. +**If you have an account on NERSC**, you can retrieve the data locally or remotely using Globus. To download simulation data locally on a NERSC machine, refer to NERSC's documentation `here `_. **If you do not have access to NERSC**, you can download simulation data directly through the NERSC HPSS `web interface `_. -Note that this will be slow and inefficient since you'll have to download the individual files. +Note that this will be slow given the large file sizes. + +Original Run Scripts +********************* Scripts originally used to run SCREAMv1 FourSeasons simulations are available `here `_. +**Warning, these will not run out-of-the-box**. They are provided to give guidance for setting up a similar run. + +Table of simulation data +************************ + .. toctree:: :maxdepth: 2 - :caption: Contents: simulation_table diff --git a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Apr.sh b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Apr.sh index 50f81ff..b5c0ca2 100755 --- a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Apr.sh +++ b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Apr.sh @@ -5,11 +5,23 @@ # Description: # # Submission script used for a 40-day ne1024pg2 -# simulation with the DYAMOND2 configuration. +# simulation with the April configuration. # +# All versions of the code used for FourSeasons +# simulations can be found at: +# +# https://github.com/AaronDonahue/scream/releases +# +# Individual Hashes for versions: +# +# Full Runs: 78d6bb1f8086b5aa1c13efa879ac36ea8d3c23f5 +# SHOC Tuning: 793dde7b0f45a772a641993fb4ce32a1578a214a +# TMS: a718a526952797af3adf08304f7d0561bc87acc7 +# Cloud Tuning: 7ab7ecaaa8d36bc908a79aa9d5d9cdd976fc1e1f #==============================================# ## Location of eamxx codebase +# NOTE TO USER: See above notes about which version of the code to use. eamxx_src=~/Code/scream ## Location of eamxx output control files eamxx_out_files_root=~/Code/scream-docs diff --git a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Oct.sh b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Oct.sh index dce8bc1..0ac4931 100755 --- a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Oct.sh +++ b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.Oct.sh @@ -5,11 +5,23 @@ # Description: # # Submission script used for a 40-day ne1024pg2 -# simulation with the DYAMOND2 configuration. +# simulation with the October configuration. # +# All versions of the code used for FourSeasons +# simulations can be found at: +# +# https://github.com/AaronDonahue/scream/releases +# +# Individual Hashes for versions: +# +# Full Runs: 78d6bb1f8086b5aa1c13efa879ac36ea8d3c23f5 +# SHOC Tuning: 793dde7b0f45a772a641993fb4ce32a1578a214a +# TMS: a718a526952797af3adf08304f7d0561bc87acc7 +# Cloud Tuning: 7ab7ecaaa8d36bc908a79aa9d5d9cdd976fc1e1f #==============================================# ## Location of eamxx codebase +# NOTE TO USER: See above notes about which version of the code to use. eamxx_src=~/Code/scream ## Location of eamxx output control files eamxx_out_files_root=~/Code/scream-docs diff --git a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond1.sh b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond1.sh index 7c32e52..2bba55c 100755 --- a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond1.sh +++ b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond1.sh @@ -5,11 +5,23 @@ USER_ENTRY#!/bin/sh -e # Description: # # Submission script used for a 40-day ne1024pg2 -# simulation with the DYAMOND2 configuration. +# simulation with the DYAMOND1 configuration. # +# All versions of the code used for FourSeasons +# simulations can be found at: +# +# https://github.com/AaronDonahue/scream/releases +# +# Individual Hashes for versions: +# +# Full Runs: 78d6bb1f8086b5aa1c13efa879ac36ea8d3c23f5 +# SHOC Tuning: 793dde7b0f45a772a641993fb4ce32a1578a214a +# TMS: a718a526952797af3adf08304f7d0561bc87acc7 +# Cloud Tuning: 7ab7ecaaa8d36bc908a79aa9d5d9cdd976fc1e1f #==============================================# ## Location of eamxx codebase +# NOTE TO USER: See above notes about which version of the code to use. eamxx_src=~/Code/scream ## Location of eamxx output control files eamxx_out_files_root=~/Code/scream-docs diff --git a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond2.sh b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond2.sh index 6f5e7b2..df56328 100755 --- a/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond2.sh +++ b/run_scripts/SCREAMv1/original/run.production.ne1024pg2_screamv1.dyamond2.sh @@ -7,9 +7,21 @@ # Submission script used for a 40-day ne1024pg2 # simulation with the DYAMOND2 configuration. # +# All versions of the code used for FourSeasons +# simulations can be found at: +# +# https://github.com/AaronDonahue/scream/releases +# +# Individual Hashes for versions: +# +# Full Runs: 78d6bb1f8086b5aa1c13efa879ac36ea8d3c23f5 +# SHOC Tuning: 793dde7b0f45a772a641993fb4ce32a1578a214a +# TMS: a718a526952797af3adf08304f7d0561bc87acc7 +# Cloud Tuning: 7ab7ecaaa8d36bc908a79aa9d5d9cdd976fc1e1f #==============================================# ## Location of eamxx codebase +# NOTE TO USER: See above notes about which version of the code to use. eamxx_src=~/Code/scream ## Location of eamxx output control files eamxx_out_files_root=~/Code/scream-docs diff --git a/utils/generate_html.bash b/utils/generate_html.bash index de2768b..3fc381c 100755 --- a/utils/generate_html.bash +++ b/utils/generate_html.bash @@ -1,4 +1,4 @@ -pr_num=50 +pr_num=52 # Chrysalis #destination_dir=/lcrc/group/e3sm/public_html/diagnostic_output/$USER/data_docs_${pr_num} @@ -7,7 +7,7 @@ pr_num=50 destination_dir=/global/cfs/cdirs/e3sm/www/$USER/data_docs_${pr_num} web_page="https://portal.nersc.gov/cfs/e3sm/$USER/data_docs_${pr_num}/html/" -python generate_tables.py +#python generate_tables.py cd ../docs/ && make html rm -rf ls ${destination_dir} mv _build ${destination_dir}