fix examples; update default set for lat_lon_native

Author: chengzhuzhang

e3sm_diags/driver/default_diags/lat_lon_native_model_vs_model.cfg

@@ -3,7 +3,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["PRECT"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
-regions = ["global", "60S60N", "30S30N-150E90W"]
+regions = ["global"]
 test_colormap = "WhiteBlueGreenYellowRed.rgb"
 reference_colormap = "WhiteBlueGreenYellowRed.rgb"
 diff_colormap = "BrBG"
@@ -15,7 +15,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["PRECC"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
-regions = ["global", "60S60N", "30S30N-150E90W"]
+regions = ["global"]
 test_colormap = "WhiteBlueGreenYellowRed.rgb"
 reference_colormap = "WhiteBlueGreenYellowRed.rgb"
 diff_colormap = "BrBG"
@@ -51,6 +51,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["SWCFSRF"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [-170, -150, -135, -120, -105, -90, -75, -60, -45, -30, -15, 0, 15, 30, 45]
 diff_levels = [-30, -25, -20, -15, -10, -5, -2, 2, 5, 10, 15, 20, 25, 30]
 
@@ -60,6 +61,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["LWCFSRF"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [0, 10, 20, 30, 40, 50, 60, 70, 80]
 diff_levels = [-30, -25, -20, -15, -10, -5, -2, 2, 5, 10, 15, 20, 25, 30]
 
@@ -69,6 +71,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["LHFLX"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [0,5, 15, 30, 60, 90, 120, 150, 180, 210, 240, 270, 300]
 diff_levels = [-75, -50, -25, -10, -5, -2, 2, 5, 10, 25, 50, 75]
 
@@ -78,6 +81,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["SHFLX"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [-100, -75, -50, -25, -10, 0, 10, 25, 50, 75, 100, 125, 150]
 diff_levels = [-75, -50, -25, -10, -5, -2, 2, 5, 10, 25, 50, 75]
 
@@ -87,6 +91,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["NET_FLUX_SRF"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [-200, -160, -120, -80, -40, 0, 40, 80, 120, 160, 200]
 diff_levels = [-75, -50, -25, -10, -5, -2, 2, 5, 10, 25, 50, 75]
 
@@ -96,6 +101,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["TMQ"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60]
 diff_levels = [-12, -9, -6, -4, -3, -2, -1, 1, 2, 3, 4, 6, 9, 12]
 
@@ -105,6 +111,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["QREFHT"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 contour_levels = [0.2, 0.5, 1, 2.5, 5, 7.5, 10, 12.5, 15, 17.5]
 diff_levels = [-5, -4, -3, -2, -1, -0.25, 0.25, 1, 2, 3, 4, 5]
 
@@ -113,6 +120,7 @@ sets = ["lat_lon_native"]
 case_id = "model_vs_model"
 variables = ["U10"]
 seasons = ["ANN", "01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "DJF", "MAM", "JJA", "SON"]
+regions = ["global"]
 test_colormap = "PiYG_r"
 reference_colormap = "PiYG_r"
 contour_levels = [2, 4, 6, 8, 10, 12, 14, 16, 18, 20]

examples/ex8-native-grid-visualization/README.md

@@ -40,10 +40,7 @@ For your own data, ensure you have:
 ### Using the Python Script
 
 ```bash
-# Edit ex8.py to set your output directory
-# Update the `prefix` variable to point to your web directory
-
-# Run with default settings
+# Run with default settings (automatically uses your username for output directory)
 python ex8.py
 
 # Run with multiprocessing for better performance
@@ -57,18 +54,28 @@ python ex8.py -d diags.cfg --multiprocessing --num_workers=32
 
 ```bash
 e3sm_diags lat_lon_native \
-  --test_data_path /lcrc/group/e3sm/public_html/e3sm_diags_test_data/native_grid \
-  --test_file v3.LR.amip_0101.eam.h0.1989-12.nc \
-  --test_grid_file /lcrc/group/e3sm/diagnostics/grids/ne30pg2.nc \
-  --reference_data_path /lcrc/group/e3sm/public_html/e3sm_diags_test_data/native_grid \
-  --ref_file v3.LR.amip_0101.eam.h0.1989-12.nc \
-  --ref_grid_file /lcrc/group/e3sm/diagnostics/grids/ne30pg2.nc \
-  --results_dir /results/ex8_native_grid \
-  --case_id model_vs_model \
+  --no_viewer \
+  --reference_data_path '/lcrc/group/e3sm/public_html/e3sm_diags_test_data/native_grid' \
+  --test_data_path '/lcrc/group/e3sm/public_html/e3sm_diags_test_data/native_grid' \
+  --results_dir '/lcrc/group/e3sm/public_html/diagnostic_output/$USER/e3sm_diags_examples/ex8_native_grid' \
+  --case_id 'model_vs_model' \
+  --run_type 'model_vs_model' \
+  --sets 'lat_lon_native' \
+  --variables 'TGCLDLWP' \
   --time_slices 0 \
-  --run_type model_vs_model
+  --main_title 'TGCLDLWP 0 global' \
+  --contour_levels '10' '25' '50' '75' '100' '125' '150' '175' '200' '225' '250' \
+  --short_test_name 'v3.LR.amip_0101' \
+  --ref_file 'v3.LR.amip_0101.eam.h0.1989-12.nc' \
+  --diff_colormap 'RdBu' \
+  --diff_levels '-35' '-30' '-25' '-20' '-15' '-10' '-5' '5' '10' '15' '20' '25' '30' '35' \
+  --test_grid_file '/lcrc/group/e3sm/diagnostics/grids/ne30pg2.nc' \
+  --ref_grid_file '/lcrc/group/e3sm/diagnostics/grids/ne30pg2.nc' \
+  --test_file 'v3.LR.amip_0101.eam.h0.1989-12.nc'
 ```
 
+**Note:** Use `--no_viewer` for command-line usage to avoid directory creation issues. For HTML viewer output, use the Python script approach instead.
+
 ## Configuration File
 
 The `diags.cfg` file allows you to customize:
@@ -86,7 +93,7 @@ The diagnostic will generate:
 - Difference plot (Test - Reference)
 - HTML viewer for browsing results
 
-Results will be saved in: `<your_directory>/ex8_native_grid/viewer/`
+Results will be saved in: `/lcrc/group/e3sm/public_html/diagnostic_output/$USER/e3sm_diags_examples/ex8_native_grid/viewer/`
 
 ## Notes
 

examples/ex8-native-grid-visualization/ex8.py

@@ -19,6 +19,9 @@
 from e3sm_diags.parameter.lat_lon_native_parameter import LatLonNativeParameter
 from e3sm_diags.run import runner
 
+# Auto-detect username
+username = os.environ.get('USER', 'unknown_user')
+
 # Create parameter object
 param = LatLonNativeParameter()
 
@@ -50,8 +53,7 @@
 param.antialiased = False
 
 # Name of the folder where the results are stored.
-# Change `prefix` to use your directory.
-prefix = "/global/cfs/cdirs/e3sm/www/<your directory>/examples"
+prefix = f"/lcrc/group/e3sm/public_html/diagnostic_output/{username}/e3sm_diags_examples"
 param.results_dir = os.path.join(prefix, "ex8_native_grid")
 
 # Below are more optional arguments.

examples/ex9-snapshot-analysis/README.md

@@ -69,18 +69,26 @@ python ex9.py -d diags.cfg --multiprocessing --num_workers=32
 
 ```bash
 e3sm_diags zonal_mean_2d \
-  --test_data_path /path/to/test/data \
-  --test_file T_005101_006012.nc \
-  --reference_data_path /path/to/ref/data \
-  --ref_file T_005101_006012.nc \
-  --results_dir /results/ex9_snapshots \
-  --case_id snapshot_comparison \
-  --time_slices 0 1 2 \
-  --run_type model_vs_model \
+  --no_viewer \
+  --reference_data_path '/lcrc/group/e3sm/public_html/e3sm_diags_test_data/postprocessed_e3sm_v2_data_for_e3sm_diags/20210528.v2rc3e.piControl.ne30pg2_EC30to60E2r2.chrysalis/time-series/rgr' \
+  --test_data_path '/lcrc/group/e3sm/public_html/e3sm_diags_test_data/postprocessed_e3sm_v2_data_for_e3sm_diags/20210528.v2rc3e.piControl.ne30pg2_EC30to60E2r2.chrysalis/time-series/rgr' \
+  --results_dir '/lcrc/group/e3sm/public_html/diagnostic_output/$USER/e3sm_diags_examples/ex9_snapshot_analysis' \
+  --case_id 'model_vs_model' \
+  --run_type 'model_vs_model' \
+  --sets 'zonal_mean_2d' \
+  --variables 'T' \
+  --time_slices 0 \
   --multiprocessing \
-  --num_workers 32
+  --main_title 'T 0 global' \
+  --contour_levels '180' '185' '190' '200' '210' '220' '230' '240' '250' '260' '270' '280' '290' '295' '300' \
+  --short_test_name 'v2 test' \
+  --ref_file 'T_005101_006012.nc' \
+  --diff_levels '-3.0' '-2.5' '-2' '-1.5' '-1' '-0.5' '-0.25' '0.25' '0.5' '1' '1.5' '2' '2.5' '3.0' \
+  --test_file 'T_005101_006012.nc'
 ```
 
+**Note:** Use `--no_viewer` for command-line usage to avoid directory creation issues. For HTML viewer output, use the Python script approach instead.
+
 **Important**: Do not use both `--time_slices` and `--seasons` in the same command!
 
 ## Configuration File

examples/ex9-snapshot-analysis/ex9.py

@@ -28,6 +28,9 @@
 from e3sm_diags.parameter.core_parameter import CoreParameter
 from e3sm_diags.run import runner
 
+# Auto-detect username
+username = os.environ.get('USER', 'unknown_user')
+
 # Create parameter object
 param = CoreParameter()
 
@@ -59,7 +62,7 @@
 
 # Name of the folder where the results are stored.
 # Change `prefix` to use your directory.
-prefix = "/global/cfs/cdirs/e3sm/www/<your directory>/examples"
+prefix = f"/lcrc/group/e3sm/public_html/diagnostic_output/{username}/e3sm_diags_examples"
 param.results_dir = os.path.join(prefix, "ex9_snapshot_analysis")
 
 # Below are more optional arguments.