Update documentation

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main/.doctrees/developers_guide/api.doctree

@@ -141,7 +141,7 @@ <h1>polaris.tasks.e3sm.init.topo.remap.MaskTopoStep.define_masks<a class="header
 for Antarctic ice shelves, which are included in both masks.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
-<dd class="field-odd"><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.4.1.dev0)"><em>xarray.Dataset</em></a>) – The dataset containing the topography fields</p>
+<dd class="field-odd"><p><strong>ds</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.6.1)"><em>xarray.Dataset</em></a>) – The dataset containing the topography fields</p>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><p><ul class="simple">

main/.doctrees/developers_guide/e3sm/init/api.doctree

@@ -144,8 +144,8 @@ <h1>polaris.tasks.e3sm.init.topo.remap.RemapTopoStep<a class="headerlink" href="
 sphere grid</p></li>
 <li><p><strong>smoothing</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.13)"><em>bool</em></a><em>, </em><em>optional</em>) – Whether smoothing will be applied as part of the remapping</p></li>
 <li><p><strong>unsmoothed_topo</strong> (<em>polaris.tasks.e3sm.init.topo.RemapTopoStep</em><em>, </em><em>optional</em>) – A step with unsmoothed topography</p></li>
-<li><p><strong>expand_distance</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.13)"><em>float</em></a><em> or </em><a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.4.1.dev0)"><em>xarray.DataArray</em></a>) – The distance to expand the topography mask</p></li>
-<li><p><strong>expand_factor</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.13)"><em>float</em></a><em> or </em><a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.4.1.dev0)"><em>xarray.DataArray</em></a>) – The factor to expand the topography mask</p></li>
+<li><p><strong>expand_distance</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.13)"><em>float</em></a><em> or </em><a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.6.1)"><em>xarray.DataArray</em></a>) – The distance to expand the topography mask</p></li>
+<li><p><strong>expand_factor</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.13)"><em>float</em></a><em> or </em><a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.6.1)"><em>xarray.DataArray</em></a>) – The factor to expand the topography mask</p></li>
 <li><p><strong>do_remapping</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.13)"><em>bool</em></a>) – Whether to remap the topography.  If False, the step will symlink
 to the unsmoothed topography file.</p></li>
 </ul>

main/.doctrees/developers_guide/mesh/api.doctree

@@ -129,7 +129,7 @@
 meshes.  The <a class="reference external" href="https://mpas-dev.github.io/pyremap/stable/">pyremap</a> provides
 capabilities for making mapping files (which contain the weights needed to
 interpolate between meshes) and using them to remap files or
-<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.4.1.dev0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">xarray.Dataset</span></code></a> objects.  Polaris provides a step for producing
+<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.6.1)"><code class="xref py py-class docutils literal notranslate"><span class="pre">xarray.Dataset</span></code></a> objects.  Polaris provides a step for producing
 such a mapping file.  Under the hood, <code class="docutils literal notranslate"><span class="pre">pyremap</span></code> uses the
 <a class="reference external" href="https://earthsystemmodeling.org/docs/release/latest/ESMF_refdoc/node3.html#SECTION03020000000000000000">ESMF_RegridWeightGen</a>
 or <a class="reference external" href="https://sigma.mcs.anl.gov/moab/offline-remapping-workflow-with-mbtempest/">mbtempest</a>

main/.doctrees/developers_guide/ocean/api.doctree

@@ -149,8 +149,8 @@ <h1>polaris.mpas.area_for_field<a class="headerlink" href="#polaris-mpas-area-fo
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>ds_mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.4.1.dev0)"><em>xarray.Dataset</em></a>) – The MPAS mesh</p></li>
-<li><p><strong>field</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.4.1.dev0)"><em>xarray.DataArray</em></a>) – The field whose dimensions determine which area to return</p></li>
+<li><p><strong>ds_mesh</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html#xarray.Dataset" title="(in xarray v2025.6.1)"><em>xarray.Dataset</em></a>) – The MPAS mesh</p></li>
+<li><p><strong>field</strong> (<a class="reference external" href="https://docs.xarray.dev/en/stable/generated/xarray.DataArray.html#xarray.DataArray" title="(in xarray v2025.6.1)"><em>xarray.DataArray</em></a>) – The field whose dimensions determine which area to return</p></li>
 </ul>
 </dd>
 <dt class="field-even">Returns<span class="colon">:</span></dt>