remove machine specific paths; zppy can auto infer through mache

Author: chengzhuzhang

examples/post.v3.LR.historical.zppy_v3.cfg

@@ -8,8 +8,8 @@
 [default]
 # Change these two paths to include your username instead
 # You can also change these to match your preferred directory structure
-output = /lcrc/group/e3sm/ac.forsyth2/example_v3/v3.LR.historical_0051
-www = /lcrc/group/e3sm/public_html/diagnostic_output/ac.forsyth2/example_v3
+output = /lcrc/group/e3sm/ac.forsyth2/zppy_example_v3/v3.LR.historical_0051
+www = /lcrc/group/e3sm/public_html/diagnostic_output/ac.forsyth2/zppy_example_v3
 # Other paths
 input = /lcrc/group/e3sm2/ac.wlin/E3SMv3/v3.LR.historical_0051
 environment_commands = "source /lcrc/soft/climate/e3sm-unified/load_latest_e3sm_unified_chrysalis.sh"
@@ -68,7 +68,7 @@ years = "1985:2014:5"
   frequency = "monthly"
   input_files = "eam.h0"
   input_subdir = "archive/atm/hist"
-  mapping_file = /home/ac.zender/data/maps/map_ne30pg2_to_cmip6_180x360_aave.20200201.nc
+  mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc
   vars = "FSNTOA,FLUT,FSNT,FLNT,FSNS,FLNS,SHFLX,QFLX,TAUX,TAUY,PRECC,PRECL,PRECSC,PRECSL,TS,TREFHT,CLDTOT,CLDHGH,CLDMED,CLDLOW,U,ICEFRAC,LANDFRAC,OCNFRAC,PS,CLDICE,CLDLIQ,T,AODDUST,PSL,U10,QREFHT,LHFLX,FLDS,TGCLDIWP,TGCLDCWP,TMQ,FLNSC,FLUTC,FSDS,FSDSC,SOLIN,FSNSC,FSNTOAC,AODABS,AODVIS,AREL,TREFMNAV,TREFMXAV"
   # Needed for mixed-phase partition:
   #  vars = "LANDFRAC,CLDICE,CLDLIQ,T"
@@ -90,7 +90,7 @@ years = "1985:2014:5"
   frequency = "daily"
   input_files = "eam.h1"
   input_subdir = "archive/atm/hist"
-  mapping_file = /home/ac.zender/data/maps/map_ne30pg2_to_cmip6_180x360_aave.20200201.nc
+  mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc
   # Needed for Wheeler Kiladis
   vars = "FLUT,PRECT,U850"
 
@@ -119,7 +119,7 @@ years = "1985:2014:5"
   input_subdir = "archive/lnd/hist"
   mapping_file = "glb"
   vars = "FSH,RH2M,LAISHA,LAISUN,QINTR,QOVER,QRUNOFF,QSOIL,QVEGE,QVEGT,SOILWATER_10CM,TSA,H2OSNO,TOTLITC,CWDC,SOIL1C,SOIL2C,SOIL3C,SOIL4C,WOOD_HARVESTC,TOTVEGC,NBP,GPP,AR,HR"
-  #vars = "" # This will tell zppy to use all available variables.
+  #vars = "" # This will tell zppy to use all available variables. Note, including all variables will increase run time for [global_time_series] time (e.g., 7 hours for 30 years data).
 
 [e3sm_to_cmip]
 # This is a new task in zppy v3.0.0!
@@ -175,15 +175,14 @@ years = "1985:2014:30",
   #
   # 1. These sets depend on the climo's task's atm_monthly_180x360_aave subtask:
   # "lat_lon", "zonal_mean_xy", "zonal_mean_2d", "polar", "cosp_histogram", "meridional_mean_2d", "annual_cycle_zonal_mean", "zonal_mean_2d_stratosphere" "aerosol_aeronet", "aerosol_budget" (not requested)
-  dc_obs_climo = '/lcrc/group/e3sm/public_html/e3sm_diags_test_data/unit_test_complete_run/obs/climatology'
   # 2. These sets depend on the climo's task's atm_monthly_diurnal_8xdaily_180x360_aave subtask:
   # "diurnal_cycle"
   climo_diurnal_frequency = "diurnal_8xdaily"
   # The name of this subtask doesn't match up with the name of the subtask for diurnal data in the `climo` task. We therefore need to explicitly tell zppy which subtask to use.
   climo_diurnal_subsection = "atm_monthly_diurnal_8xdaily_180x360_aave"
   # 3. These sets depend on the ts task's atm_monthly_180x360_aave subtask:
   # "enso_diags" (not requested), "qbo", "area_mean_time_series" (not requested)
-  obs_ts = '/lcrc/soft/climate/e3sm_diags_data/obs_for_e3sm_diags/time-series'
+#  obs_ts = '/lcrc/soft/climate/e3sm_diags_data/obs_for_e3sm_diags/time-series'
   # 4. These sets depend on the ts task's atm_daily_180x360_aave subtask:
   # "tropical_subseasonal"
   ts_daily_subsection = "atm_daily_180x360_aave"
@@ -195,7 +194,6 @@ years = "1985:2014:30",
   #
   # Plus several other parameters:
   grid = '180x360_aave'
-  reference_data_path = '/lcrc/soft/climate/e3sm_diags_data/obs_for_e3sm_diags/climatology'
   short_name = 'v3.LR.historical_0051'
 
   [[atm_monthly_180x360_aave_mvm]]
@@ -204,6 +202,7 @@ years = "1985:2014:30",
   # Group 1: climo atm monthly
   # "lat_lon", "zonal_mean_xy", "zonal_mean_2d", "polar", "cosp_histogram", "meridional_mean_2d", "annual_cycle_zonal_mean", "zonal_mean_2d_stratosphere" "aerosol_aeronet" (not requested), "aerosol_budget" (not requested)
   climo_subsection = "atm_monthly_180x360_aave"
+  # The reference_data_path should point to pre-computed climatology files from a nclimo/zppy run
   reference_data_path = '/lcrc/group/e3sm2/ac.zhang40/E3SMv3/v3.LR.piControl_451-500/post/atm/180x360_aave/clim'
   # Group 2: climo atm diurnal
   # "diurnal_cycle"
@@ -239,14 +238,15 @@ years = "1985:2014:30",
   # Other parameters:
   diff_title = "Difference"
   grid = 'native'
+  # The reference_data_path should point to pre-computed climatology files from a nclimo/zppy run
   reference_data_path = "/lcrc/group/e3sm2/ac.zhang40/E3SMv3/v3.LR.piControl_451-500/post/lnd/native/clim"
   ref_name = "v3.LR.piControl"
   ref_final_yr = 451
   ref_start_yr = 500
   ref_years = "451-500",
   run_type = "model_vs_model"
-  short_ref_name = "v3.LR.piControl"
   short_name = v3.LR.historical_0051
+  short_ref_name = "v3.LR.piControl"
   swap_test_ref = False
   tag = "model_vs_model"