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Standalone zi testing
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‎examples/post.v3.LR.amip.0101.zi_setup.cfg‎

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# Modify this cfg to generate the necessary data for stand-alone tests of zppy-interfaces
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# 1. Update <output>, <www>, <environment_commands_secondary> below.
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# 2. Run with `zppy -c examples/post.v3.LR.amip.0101.zi_setup.cfg`.
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# 3. Once the jobs finish, `cd <output>/post/scripts`.
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# 4. Run `grep -n "About to run:" pcmdi_diags*.o*` to find the pcmdi_diags commands.
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# 5. Then, you can run those lines stand-alone.
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[default]
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input = /lcrc/group/e3sm2/ac.wlin/E3SMv3/AMIP/v3.LR.amip_0101
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output = /lcrc/group/e3sm/ac.forsyth2/zi_pcmdi_stand_alone_setup/unique_id_1/v3.LR.amip_0101
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www = /lcrc/group/e3sm/public_html/diagnostic_output/ac.forsyth2/zi_pcmdi_stand_alone_setup/unique_id_1
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campaign = "water_cycle"
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case = v3.LR.amip_0101
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debug = False
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environment_commands = "source /lcrc/soft/climate/e3sm-unified/load_latest_e3sm_unified_chrysalis.sh"
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partition = debug #compute
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[ts]
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active = True
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walltime = "00:10:00"
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years = "2005:2015:5"
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[[ atm_monthly_180x360_aave ]]
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input_subdir = "archive/atm/hist"
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input_files = "eam.h0"
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frequency = "monthly"
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mapping_file = /home/ac.zender/data/maps/map_ne30pg2_to_cmip6_180x360_aave.20200201.nc
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# list for pcmdi diag, note: PHIS,hyam,hybm,hyai,hybi need to be included to process the 3D fields
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vars = "ICEFRAC,LANDFRAC,OCNFRAC,PSL,FSNTC,FSNTOAC,SWCF,LWCF,FLUT,FSNT,FSNTOA,FLNT,FLNTC,FSNS,FLNS,FSNS,SHFLX,QFLX,LHFLX,TAUX,TAUY,PRECC,PRECL,PRECSC,PRECSL,TS,TREFHT,U10,QREFHT,TMQ,CLDTOT,CLDHGH,CLDMED,CLDLOW,FLDS,FSDS,TGCLDIWP,TGCLDCWP,TGCLDLWP,FLNSC,FLUTC,FSDSC,SOLIN,FSNSC,AODABS,AODVIS,AODDUST,AREL,TREFMNAV,TREFMXAV,PS,PHIS,U,V,T,Z3"
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[e3sm_to_cmip]
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active = True
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frequency = "monthly"
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ts_grid = "180x360_aave"
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ts_num_years=5
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walltime = "00:10:00"
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years = "2005:2015:5"
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[[ atm_monthly_180x360_aave ]]
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# list of variables to be interpolated to pressure level; see e3sm_to_cmip/vrt_remap_plev19.nc
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# This defaults to cmip_plevdata = string(default="inclusions/e3sm_to_cmip/vrt_remap_plev19.nc")
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# cmip_plevdata = /lcrc/group/e3sm/ac.szhang/acme_scratch/e3sm_project/zppy/zppy/templates/inclusions/e3sm_to_cmip/vrt_remap_plev19.nc
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input_files = "eam.h0"
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interp_vars = "U,V,T,Z3"
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ts_subsection = "atm_monthly_180x360_aave"
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vars = "ICEFRAC,LANDFRAC,OCNFRAC,PSL,FSNTC,FSNTOAC,SWCF,LWCF,FLUT,FSNT,FSNTOA,FLNT,FLNTC,FSNS,FLNS,FSNS,SHFLX,QFLX,LHFLX,TAUX,TAUY,PRECC,PRECL,PRECSC,PRECSL,TS,TREFHT,U10,QREFHT,TMQ,CLDTOT,CLDHGH,CLDMED,CLDLOW,FLDS,FSDS,TGCLDIWP,TGCLDCWP,TGCLDLWP,FLNSC,FLUTC,FSDSC,SOLIN,FSNSC,AODABS,AODVIS,AODDUST,AREL,TREFMNAV,TREFMXAV,PS,PHIS,U,V,T,Z3"
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[pcmdi_diags]
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active = True
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environment_commands = "source /lcrc/soft/climate/e3sm-unified/load_latest_e3sm_unified_chrysalis.sh"
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environment_commands_secondary = "source /gpfs/fs1/home/ac.forsyth2/miniforge3/etc/profile.d/conda.sh; conda activate zi-pcmdi-diags-20250930"
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nodes = 1
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walltime = "4:00:00"
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figure_format = "png"
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run_type = "model_vs_obs"
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# Create rules to construct cmip-like datasets with a string constructed as
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# "mip.exp.product.realization", where "."is used as the delimiter (mandatory)
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model_name = 'e3sm.amip.v3-LR.0101'
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model_tableID = 'Amon'
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multiprocessing = True
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num_workers = 24
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# Observational data
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obs_ts = '/lcrc/soft/climate/e3sm_diags_data/obs_for_e3sm_diags/time-series'
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pcmdi_debug = False
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ts_years = "2005-2014",
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[[ mean_climate ]]
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active = True
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# Default for all variables or specify source for each variable separately.
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obs_sets = "default"
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ref_final_yr = 2018
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ref_start_yr = 1979
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ref_years = "2005-2014",
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# Variables in current pcmdi-cmip list
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# rltcre and rstcre are derived variables as they are not included in cmip_ts
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vars = "pr,prw,psl,rlds,rldscs,rltcre,rstcre,rsus,rsuscs,rlus,rlut,rlutcs,rsds,rsdscs,rsdt,rsut,rsutcs,rtmt,sfcWind,tas,tauu,tauv,ts,ta-200,ta-850,ua-200,ua-850,va-200,va-850,zg-500"
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# See zppy/templates/pcmdi_diags/regions_specs.json for options of all regions
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# Below is default setup for global/regional mean climate metrics
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regions = "global,ocean,land,NHEX,SHEX,TROPICS"
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target_grid = "2.5x2.5"
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target_grid_string = "2p5x2p5"
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[[ variability_modes_cpl ]]
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active = True
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# See zppy/templates/pcmdi_diags/reference_alias.json for options
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obs_sets = "alternate1" #"default"
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ref_final_yr = 2019
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ref_start_yr = 1870
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ref_years = "2005-2014",
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vars = "ts"
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# Name of modes varibility
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cpl_modes = "PDO,NPGO,AMO"
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frequency = 'mo'
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landmask = True
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ModUnitsAdjust = '(True,"subtract",273.15)'
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ObsUnitsAdjust = '(True,"subtract",273.15)'
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seasons = "yearly,monthly"
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[[ variability_modes_atm ]]
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active = True
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# See zppy/templates/pcmdi_diags/reference_alias.json for options
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# Default for all variables
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obs_sets = "alternate2" # "default"
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ref_final_yr = 2015
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ref_start_yr = 1853
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ref_years = "2005-2014",
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vars = "psl"
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# Varibility modes
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atm_modes = "NAM,NAO,PNA,NPO,SAM,PSA1,PSA2"
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frequency = 'mo'
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landmask = False
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ModUnitsAdjust = '(True,"divide",100.0)'
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ObsUnitsAdjust = '(True,"divide",100.0)'
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seasons = "DJF,MAM,JJA,SON,yearly,monthly"
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[[ enso ]]
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active = False
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# For enso, the obs_sets is explicitely set for each variable to ensure that
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# they are from the same source, below are setup to used ERA5 reanalysis.
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obs_sets = "default,alternate2,default,default,default,default,default,default,default,alternate2,alternate2,alternate2,alternate2,alternate2"
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ref_final_yr = 2018
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ref_start_yr = 1979
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ref_years = "2005-2014",
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vars = "psl,pr,prsn,ts,tas,tauu,tauv,hfls,hfss,rlds,rsds,rlus,rlut,rsdt"
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# See zppy/templates/pcmdi_diags/reference_alias.json for options
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enso_groups = "ENSO_perf,ENSO_proc,ENSO_tel"
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[[ synthetic_plots ]]
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active = True
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# clim_period, emov_period, enso_period:
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figure_sets_period = "2005-2014,2005-2014,2005-2014"
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# Location: /lcrc/group/e3sm/diagnostics/pcmdi_data/metrics_data/mean_climate/cmip6/amip
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cmip_clim_set = "cmip6.amip.v20250702"
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# Location: /lcrc/group/e3sm/diagnostics/pcmdi_data/metrics_data/variability_modes/cmip6/amip
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cmip_movs_set = "cmip6.amip.v20210119"
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# Location: /lcrc/group/e3sm/diagnostics/pcmdi_data/metrics_data/enso_metric/cmip6/historical
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# There is no enso metric for CMIP6 AMIP, so use historical instead
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cmip_enso_set = "cmip6.historical.v20210620"

‎zppy/templates/pcmdi_diags.bash‎

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echo "Linking observational data using SLURM..."
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command="zi-pcmdi-link-observation --model_name_ref ${model_name_ref} --tableID_ref ${tableID_ref} --vars=${source_vars} --obs_sets {{ obs_sets }} --obs_ts {{ obs_ts }} --obstmp_dir ${obstmp_dir}"
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echo "Running: ${command}"
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echo "Running a zi-pcmdi command: ${command}"
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{{ environment_commands_secondary }}
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time eval "${command}"
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# Run diagnostics
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{{ environment_commands_secondary }}
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echo "About to run a zi-pcmdi command"
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echo "Running a zi-pcmdi command: ${command}"
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echo "The current directory is: $PWD" # This will be of the form .../post/scripts/tmpDir
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time ${command}
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if [ $? != 0 ]; then

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