Update package versions (#228)

Author: forsyth2

.github/workflows/build_workflow.yml

@@ -81,7 +81,7 @@ jobs:
 
       - name: Install Dependencies
         run: |
-          pip install sphinx==3.5.1 sphinx_rtd_theme==0.5.1 sphinx-multiversion==0.2.4 docutils==0.16 "jinja2<3.1"
+          pip install sphinx==5.2.3 sphinx_rtd_theme==1.0.0 sphinx-multiversion==0.2.4 docutils==0.16 "jinja2<3.1"
 
       - name: Build Sphinx Docs
         run: |

.github/workflows/release_workflow.yml

@@ -37,7 +37,7 @@ jobs:
       # Low risk trade-off with mismatching dependencies in `conda/zstash_dev.yml`
       - name: Install Dependencies
         run: |
-          pip install sphinx==3.5.1 sphinx_rtd_theme==0.5.1 sphinx-multiversion==0.2.4 docutils==0.16 "jinja2<3.1"
+          pip install sphinx==5.2.3 sphinx_rtd_theme==1.0.0 sphinx-multiversion==0.2.4 docutils==0.16 "jinja2<3.1"
 
       - name: Build Sphinx Docs
         run: |

conda/dev.yml

@@ -5,29 +5,29 @@ channels:
 dependencies:
   # Base
   # =================
-  - pip=21.0.1
-  - python=3.9
+  - pip=22.2.2
+  - python=3.9.13
   - six=1.16.0
   - globus-sdk=3.2.1
   - fair-research-login=0.2.0
   # Developer Tools
   # =================
   # If versions are updated, also update 'rev' in `.pre-commit.config.yaml`
-  - black=22.3.0
-  - flake8=3.8.4
-  - flake8-isort=4.0.0
-  - mypy=0.790
-  - pre-commit=2.10.1
+  - black=22.8.0
+  - flake8=5.0.4
+  - flake8-isort=4.2.0
+  - mypy=0.982
+  - pre-commit=2.20.0
+  - tbump=6.9.0
   # Documentation
   # =================
   # If versions are updated, also update in `.github/workflows/workflow.yml`
   - jinja2<3.1
-  - sphinx=3.5.1
-  - sphinx_rtd_theme=0.5.1
+  - sphinx=5.2.3
+  - sphinx_rtd_theme=1.0.0
   # Need to pin docutils because 0.17 has a bug with unordered lists
   # https://github.com/readthedocs/sphinx_rtd_theme/issues/1115
   - docutils=0.16
   - pip:
       - sphinx-multiversion==0.2.4
-      - tbump==6.3.2
 prefix: /opt/miniconda3/envs/zstash_dev