Moved path

Author: tgurbich

config/modules.config

@@ -93,9 +93,9 @@ process {
 process {
     withName: RENAME_FASTA {
         publishDir = [
-        path: "${params.outdir}",
+        path: "${params.outdir}/additional_data/intermediate_files",
         pattern: "*.tsv",
-        saveAs: { "additional_data/intermediate_files/renamed_genomes_name_mapping.tsv" },
+        saveAs: { "renamed_genomes_name_mapping.tsv" },
         mode: 'copy',
         enabled: !params.update_catalogue_path ? true : false,
         failOnError: true