remove logging from protein_chunker

Author: KateSakharova

tools/chunks/protein_chunker.cwl

@@ -9,7 +9,8 @@ doc: based upon code by Maxim Scheremetjew, EMBL-EBI
 requirements:
   ResourceRequirement:
     coresMax: 1
-    ramMin: 5000
+    ramMin: 8000
+  ShellCommandRequirement: {}
 
 hints:
   DockerRequirement:
@@ -36,6 +37,15 @@ inputs:
     inputBinding:
       prefix: -f
 
+arguments:
+  - valueFrom: '> /dev/null'
+    shellQuote: false
+    position: 10
+  - valueFrom: '2> /dev/null'
+    shellQuote: false
+    position: 11
+
+
 baseCommand: [ split_to_chunks.py ]
 
 outputs:

workflows/subworkflows/trim_and_reformat_reads.cwl

@@ -36,7 +36,7 @@ steps:
   split_seqs:
     in:
       seqs: reads
-      chunk_size: { default: 2000000 }
+      chunk_size: { default: 1000000 }
       file_format: { default: 'fastq' }
       fastq_count: count
     out: [ chunks ]