ansible/Conda.yml at main · EDS-Bioinformatics-Laboratory/ansible · GitHub

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---
- name: Install Conda, Python, and other packages
  hosts: all
  vars_files:
    - config.yml
  remote_user: "{{ username }}"
  become: true
  connection: local

  tasks:
    - name: Add Conda repository
      ansible.builtin.shell: bash /home/{{ username }}/ansible/scripts/download-conda.sh
      args:
        executable: /bin/bash

    - name: Apt update after adding Conda repo
      apt:
        update_cache: yes

    - name: Install Conda
      apt:
        name: "conda"
        state: present

    - name: Install Python3 and pip
      ansible.builtin.apt:
        name:
          - python3
          - python3-pip
          - python3-dev
        state: present
        update_cache: yes

    - name: Upgrade pip to latest version
      ansible.builtin.pip:
        name: pip
        state: latest
        executable: pip3

#    - name: Install numpy and pandas
#      ansible.builtin.pip:
#        name:
#          - numpy
#          - pandas
#        state: present
#        executable: pip3

    - name: Install python packages
      ansible.builtin.shell:
        cmd: /opt/conda/bin/conda install -y numpy pandas notebook=7
      args:
        executable: /bin/bash
      environment:
        HOME: "{{ root_path }}"
        USER: "{{ username }}"
        CONDA_PKGS_DIRS: "{{ root_path }}/.conda/pkgs"
        CONDA_ENVS_PATH: "{{ root_path }}/.conda/envs"
      become: no

    - name: Verify Python installation
      ansible.builtin.command:
        cmd: python3 --version
      register: python_version
      changed_when: false

#    - name: Verify numpy installation
#      ansible.builtin.command:
#        cmd: python3 -c "import numpy; print(f'numpy {numpy.__version__}')"
#      register: numpy_version
#      changed_when: false

#    - name: Verify pandas installation
#      ansible.builtin.command:
#        cmd: python3 -c "import pandas; print(f'pandas {pandas.__version__}')"
#      register: pandas_version
#      changed_when: false

    - name: Display installation summary
      ansible.builtin.debug:
        msg:
          - "Installation complete!"
          - "{{ python_version.stdout }}"
#          - "{{ numpy_version.stdout }}"
#          - "{{ pandas_version.stdout }}"

    - name: Add Conda to bashrc
      ansible.builtin.lineinfile:
        dest: /home/{{ username }}/.bashrc
        regexp: 'conda.sh'
        line: 'source /opt/conda/etc/profile.d/conda.sh'
        create: yes
        state: present

    - name: Activate conda in bashrc
      ansible.builtin.lineinfile:
        dest: /home/{{ username }}/.bashrc
        regexp: 'conda activate base'
        line: 'conda activate base'
        create: yes
        state: present