Monitoring Norwegian submissions to SRA samples #110
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| name: Monitoring Norwegian submissions to SRA samples | |
| on: | |
| schedule: | |
| - cron: "0 0 * * *" | |
| workflow_dispatch: | |
| jobs: | |
| default-shell: | |
| name: Default shell | |
| runs-on: "ubuntu-latest" | |
| permissions: | |
| contents: write | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token | |
| fetch-depth: 0 # otherwise, you will fail to push refs to dest repo - uses: conda-incubator/setup-miniconda@v3 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: EBIsearch | |
| environment-file: EBIsearch_environment.yml | |
| - run: | | |
| python monitoring_sra-samples_EBIsearch.py | |
| - name: Commit & Push changes | |
| uses: actions-js/push@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| message: "Automated commit" |