Updating to flattened atmos_phys to_be_ccppized folder.

Author: mwaxmonsky

.gitmodules

@@ -36,7 +36,7 @@
 [submodule "atmos_phys"]
 	path = src/atmos_phys
 	url = https://github.com/mwaxmonsky/atmospheric_physics
-        fxtag =  2b03bea15d533e4d983ec910a0d09f1111167e6b
+        fxtag =  a1e05a5e8e30d36d2b36866a84568a791c37d679
         fxrequired = AlwaysRequired
 	fxDONOTUSEurl = https://github.com/mwaxmonsky/atmospheric_physics
 

bld/configure

@@ -2332,8 +2332,7 @@ sub write_filepath
     # be overridden by modules from directories that occur earlier
     # in the list of filepaths.
     print $fh "$camsrcdir/src/physics/cam\n";
-    print $fh "$camsrcdir/src/atmos_phys/to_be_ccppized/utilities\n";
-    print $fh "$camsrcdir/src/atmos_phys/to_be_ccppized/physics/cam\n";
+    print $fh "$camsrcdir/src/atmos_phys/to_be_ccppized\n";
 
     #Add the CCPP'ized subdirectories
     print $fh "$camsrcdir/src/atmos_phys/schemes/tropopause_find\n";