Merge branch 'cesm3.0-alphabranch'

Author: fischer-ncar

.gitmodules

@@ -30,14 +30,14 @@
         path = ccs_config
         url = https://github.com/ESMCI/ccs_config_cesm.git
         fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
-        fxtag = ccs_config_cesm1.0.63
+        fxtag = ccs_config_cesm1.0.65
         fxrequired = ToplevelRequired
 
 [submodule "cime"]
         path = cime
         url = https://github.com/ESMCI/cime
         fxDONOTUSEurl = https://github.com/ESMCI/cime
-	fxtag = cime6.1.135
+	fxtag = cime6.1.144
         fxrequired = ToplevelRequired
 
 [submodule "fms"]
@@ -51,14 +51,14 @@
         path = share
         url = https://github.com/ESCOMP/CESM_share
         fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share
-        fxtag = share1.1.9
+        fxtag = share1.1.16
         fxrequired = ToplevelRequired
 
 [submodule "cam"]
         path = components/cam
         url = https://www.github.com/ESCOMP/CAM
         fxDONOTUSEurl = https://www.github.com/ESCOMP/CAM
-        fxtag = cam6_4_126
+        fxtag = cam6_4_133
         fxrequired = ToplevelRequired
 
 [submodule "clm"]
@@ -80,7 +80,7 @@
         url = https://github.com/ESCOMP/MOM_interface
         fxDONOTUSEurl = https://github.com/ESCOMP/MOM_interface
         fxrequired = ToplevelRequired
-        fxtag = mi_251112
+        fxtag = mi_251121
 
 [submodule "cism"]
         path = components/cism
@@ -94,14 +94,14 @@
         url = https://github.com/ESCOMP/CDEPS
         fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS
         fxrequired = ToplevelRequired
-        fxtag = cdeps1.0.83
+        fxtag = cdeps1.0.84
 
 [submodule "cmeps"]
         path = components/cmeps
         url = https://github.com/ESCOMP/CMEPS.git
         fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
         fxrequired = ToplevelRequired
-	fxtag = cmeps1.1.23
+	fxtag = cmeps1.1.24
 
 [submodule "rtm"]
         path = components/rtm
@@ -122,7 +122,7 @@
         url = https://github.com/ESCOMP/mizuRoute
         fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute
         fxrequired = ToplevelRequired
-        fxtag = v3.0.0
+        fxtag = v3.0.1
 
 [submodule "mosart"]
         path = components/mosart
@@ -157,7 +157,7 @@
         url = https://github.com/NCAR/CUPiD.git
         fxDONOTUSEurl = https://github.com/NCAR/CUPiD.git
         fxrequired = ToplevelRequired
-        fxtag = v0.3.1
+        fxtag = v0.4.0
 
 [submodule "FTorch"]
 	path = libraries/FTorch

.lib/git-fleximod/.github/workflows/pytest.yaml

@@ -73,8 +73,7 @@ jobs:
       - run: |
           git config --global user.name "${GITHUB_ACTOR}"
           git config --global user.email "${GITHUB_ACTOR_ID}+${GITHUB_ACTOR}@users.noreply.github.com"
-          poetry run pytest
-      - name: Setup tmate session
-        if: ${{ failure() }}
-        uses: mxschmitt/action-tmate@v3
-
+          poetry run pytest --doctest-modules
+#      - name: Setup tmate session
+#        if: ${{ failure() }}
+#        uses: mxschmitt/action-tmate@v3

.lib/git-fleximod/.pre-commit-config.yaml

@@ -2,7 +2,7 @@ exclude: ^utils/.*$
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v6.0.0
     hooks:
       - id: end-of-file-fixer
       - id: trailing-whitespace

.lib/git-fleximod/CODE_OF_CONDUCT.md

@@ -17,7 +17,7 @@ Examples of behaviors that contribute to a positive environment include:
 * Communicate openly with respect for others, critiquing ideas rather than individuals and gracefully accepting criticism
 * Acknowledging the contributions of others
 * Avoid personal attacks directed toward other participants
-* Be mindful of your surroundings and of your fellow participants 
+* Be mindful of your surroundings and of your fellow participants
 * Alert UCAR staff and suppliers/vendors if you notice a dangerous situation or someone in distress
 * Respect the rules and policies of the project and venue
 
@@ -29,7 +29,7 @@ Examples of unacceptable behavior include, but are not limited to:
 * Personal attacks directed at other guests, members, participants, etc.
 * Publishing others' private information, such as a physical or electronic address, without explicit permission
 * Alarming, intimidating, threatening, or hostile comments or conduct
-* Inappropriate use of nudity and/or sexual images 
+* Inappropriate use of nudity and/or sexual images
 * Threatening or stalking anyone, including a participant
 * Other conduct which could reasonably be considered inappropriate in a professional setting
 
@@ -60,7 +60,7 @@ the [Attribution](#attribution) section.
 ## Reporting
 Instances of unacceptable behavior can be brought to the attention of the project administrator(s) who may take any action as
 outlined in the [Consequences](#consequences) section below.
-However, making a report to a project administrator is not considered an 'official report' to UCAR. 
+However, making a report to a project administrator is not considered an 'official report' to UCAR.
 
 Instances of unacceptable behavior may also be reported directly to UCAR pursuant to [UCAR's Harassment Reporting and Complaint
 Procedure](https://www2.fin.ucar.edu/procedures/hr/harassment-reporting-and-complaint-procedure), or anonymously through [UCAR's

.lib/git-fleximod/git_fleximod/cli.py

@@ -1,8 +1,8 @@
 from pathlib import Path
 import argparse, os, sys
-from git_fleximod import utils
 
-__version__ = "1.0.3"
+__version__ = "1.1.1"
+
 
 class CustomArgumentParser(argparse.ArgumentParser):
     def print_help(self, file=None):
@@ -17,13 +17,28 @@ def print_help(self, file=None):
         for path in candidate_paths:
             if os.path.exists(path):
                 with open(path) as f:
-                    print( f.read(), file=file)
+                    print(f.read(), file=file)
                     return
-        print( "README.md not found.", file=file)
+        print("README.md not found.", file=file)
+
 
 def find_root_dir(filename=".gitmodules"):
-    """ finds the highest directory in tree
-    which contains a file called filename """
+    """
+    Finds the highest directory in tree which contains a file called filename.
+
+    >>> import tempfile, os
+    >>> cwd = os.getcwd()
+    >>> with tempfile.TemporaryDirectory() as tmp:
+    ...     subdir = Path(tmp) / 'subdir'
+    ...     subdir.mkdir()
+    ...     f = Path(tmp) / '.gitmodules'
+    ...     _ = f.write_text('')
+    ...     os.chdir(subdir)
+    ...     result = find_root_dir('.gitmodules') == str(tmp)
+    ...     os.chdir(cwd)
+    ...     result
+    True
+    """
     d = Path.cwd()
     root = Path(d.root)
     dirlist = []
@@ -40,6 +55,7 @@ def find_root_dir(filename=".gitmodules"):
             return str(dl)
     return None
 
+
 def get_parser():
     description = """
     %(prog)s manages checking out groups of gitsubmodules with additional support for Earth System Models
@@ -116,6 +132,13 @@ def get_parser():
         "verbosity level each time.",
     )
 
+    parser.add_argument(
+        "--no-mods-details",
+        action="store_true",
+        default=False,
+        help="Suppress details on local mods in status output.",
+    )
+
     parser.add_argument(
         "-V",
         "--version",