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Merge pull request #2155 from olyson/PLUMBERcsv
PLUMBER2 plumbing (csv file, wrapper script, usermods, and scripts).
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‎.git-blame-ignore-revs‎

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# Ran python directory through black python formatter
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b429b63824e09f82e95d2982f14311cbbd8e4a37
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d229b5c6689efc4c2a6cef077515c4ccd5c18ff6
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4cd83cb3ee6d85eb909403487abf5eeaf4d98911
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0aa2957c1f8603c63fa30b11295c06cfddff44a5

‎bld/namelist_files/namelist_definition_ctsm.xml‎

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@@ -1971,6 +1971,12 @@ Filename of input stream data for LAI
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Filename of input stream data for LAI
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</entry>
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<entry id="lai_dtlimit" type="real" category="datasets"
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group="lai_streams" valid_values="" >
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dtlimit (ratio of max/min stream delta times) for LAI streams, which allows for cycling over a year of data
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</entry>
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<entry id="lai_tintalgo" type="char*80" category="datasets"
19751981
group="lai_streams" valid_values="linear,nearest,lower,upper" >
19761982
Time interpolation method to use with LAI streams

‎cime_config/usermods_dirs/PLUMBER2/AR-SLu/include_user_mods‎

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../defaults

‎cime_config/usermods_dirs/PLUMBER2/AR-SLu/shell_commands‎

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./xmlchange PTS_LON=-66.459808
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./xmlchange PTS_LAT=-33.464802
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./xmlchange DATM_YR_END=2010
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./xmlchange START_TOD=10800
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./xmlchange ATM_NCPL=48
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echo "fsurdat='/glade/u/home/wwieder/CTSM/tools/site_and_regional/subset_data_single_point/surfdata_1x1_PLUMBER2_AR-SLu_hist_16pfts_Irrig_CMIP6_simyr2000_c231005.nc ' " >> user_nl_clm
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echo "CLM_USRDAT.PLUMBER2:datafiles= \$DIN_LOC_ROOT/atm/datm7/CLM1PT_data/PLUMBER2/AR-SLu/CLM1PT_data/CTSM_DATM_AR-SLu_2010-2010.nc " >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_last=2010" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_last=2010" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_last=2010" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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compset=`./xmlquery COMPSET --value`
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CLM_USRDAT_NAME=`./xmlquery CLM_USRDAT_NAME --value`
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TEST=`./xmlquery TEST --value`
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# For a transient case run the whole length and do not cycle
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if [[ $compset =~ ^HIST ]]; then
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# Number of years that can be run for the full transient case
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if [[ $TEST != "TRUE" ]]; then
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./xmlchange STOP_N=1
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fi
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# set start date for transient case with historical compset
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./xmlchange RUN_STARTDATE=2010-01-01
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./xmlchange DATM_YR_ALIGN=2010
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./xmlchange DATM_YR_START=2010
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else
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# for spinup case with I2000 compset
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./xmlchange RUN_STARTDATE=0001-01-01
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./xmlchange DATM_YR_ALIGN=1
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./xmlchange DATM_YR_START=2010
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fi
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# Turn on LAI streams for a SP case
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if [[ $compset =~ .*CLM[0-9]+%[^_]*SP.* ]]; then
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echo "stream_fldfilename_lai='\$DIN_LOC_ROOT/lnd/clm2/lai_streams/PLUMBER2/AR-SLu/LAI_stream_AR-SLu_2010-2010.nc'" >> user_nl_clm
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echo "stream_year_last_lai=2010" >> user_nl_clm
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if [[ $compset =~ ^HIST ]]; then
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# for transient case with a historical compset
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echo "model_year_align_lai=2010" >> user_nl_clm
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echo "stream_year_first_lai=2010" >> user_nl_clm
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else
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# for a spinup case with a i2000 compset
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echo "model_year_align_lai=1" >> user_nl_clm
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echo "stream_year_first_lai=2010" >> user_nl_clm
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fi
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fi
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‎cime_config/usermods_dirs/PLUMBER2/AT-Neu/include_user_mods‎

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../defaults

‎cime_config/usermods_dirs/PLUMBER2/AT-Neu/shell_commands‎

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./xmlchange PTS_LON=11.3175
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./xmlchange PTS_LAT=47.116669
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./xmlchange DATM_YR_END=2012
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./xmlchange START_TOD=82800
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./xmlchange ATM_NCPL=48
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echo "fsurdat='/glade/u/home/wwieder/CTSM/tools/site_and_regional/subset_data_single_point/surfdata_1x1_PLUMBER2_AT-Neu_hist_16pfts_Irrig_CMIP6_simyr2000_c231005.nc ' " >> user_nl_clm
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echo "CLM_USRDAT.PLUMBER2:datafiles= \$DIN_LOC_ROOT/atm/datm7/CLM1PT_data/PLUMBER2/AT-Neu/CLM1PT_data/CTSM_DATM_AT-Neu_2002-2012.nc " >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_first=2002" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_last=2012" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_align=2002" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_first=2002" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_last=2012" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_align=2002" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_first=2002" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_last=2012" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_align=2002" >> user_nl_datm_streams
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compset=`./xmlquery COMPSET --value`
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CLM_USRDAT_NAME=`./xmlquery CLM_USRDAT_NAME --value`
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TEST=`./xmlquery TEST --value`
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# For a transient case run the whole length and do not cycle
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if [[ $compset =~ ^HIST ]]; then
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# Number of years that can be run for the full transient case
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if [[ $TEST != "TRUE" ]]; then
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./xmlchange STOP_N=11
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fi
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# set start date for transient case with historical compset
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./xmlchange RUN_STARTDATE=2001-12-31
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./xmlchange DATM_YR_ALIGN=2001
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./xmlchange DATM_YR_START=2001
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else
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# for spinup case with I2000 compset
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./xmlchange RUN_STARTDATE=0001-01-01
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./xmlchange DATM_YR_ALIGN=1
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./xmlchange DATM_YR_START=2002
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fi
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# Turn on LAI streams for a SP case
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if [[ $compset =~ .*CLM[0-9]+%[^_]*SP.* ]]; then
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echo "stream_fldfilename_lai='\$DIN_LOC_ROOT/lnd/clm2/lai_streams/PLUMBER2/AT-Neu/LAI_stream_AT-Neu_2002-2012.nc'" >> user_nl_clm
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echo "stream_year_last_lai=2012" >> user_nl_clm
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if [[ $compset =~ ^HIST ]]; then
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# for transient case with a historical compset
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echo "model_year_align_lai=2001" >> user_nl_clm
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echo "stream_year_first_lai=2001" >> user_nl_clm
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else
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# for a spinup case with a i2000 compset
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echo "model_year_align_lai=1" >> user_nl_clm
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echo "stream_year_first_lai=2002" >> user_nl_clm
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fi
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fi
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‎cime_config/usermods_dirs/PLUMBER2/AU-ASM/include_user_mods‎

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../defaults

‎cime_config/usermods_dirs/PLUMBER2/AU-ASM/shell_commands‎

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./xmlchange PTS_LON=133.24899299999998
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./xmlchange PTS_LAT=-22.283001000000002
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./xmlchange DATM_YR_END=2017
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./xmlchange START_TOD=54000
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./xmlchange ATM_NCPL=48
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echo "fsurdat='/glade/u/home/wwieder/CTSM/tools/site_and_regional/subset_data_single_point/surfdata_1x1_PLUMBER2_AU-ASM_hist_16pfts_Irrig_CMIP6_simyr2000_c231005.nc ' " >> user_nl_clm
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echo "CLM_USRDAT.PLUMBER2:datafiles= \$DIN_LOC_ROOT/atm/datm7/CLM1PT_data/PLUMBER2/AU-ASM/CLM1PT_data/CTSM_DATM_AU-ASM_2011-2017.nc " >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_first=2011" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_last=2017" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_align=2011" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_first=2011" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_last=2017" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_align=2011" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_first=2011" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_last=2017" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_align=2011" >> user_nl_datm_streams
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compset=`./xmlquery COMPSET --value`
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CLM_USRDAT_NAME=`./xmlquery CLM_USRDAT_NAME --value`
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TEST=`./xmlquery TEST --value`
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# For a transient case run the whole length and do not cycle
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if [[ $compset =~ ^HIST ]]; then
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# Number of years that can be run for the full transient case
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if [[ $TEST != "TRUE" ]]; then
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./xmlchange STOP_N=7
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fi
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# set start date for transient case with historical compset
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./xmlchange RUN_STARTDATE=2010-12-31
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./xmlchange DATM_YR_ALIGN=2010
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./xmlchange DATM_YR_START=2010
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else
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# for spinup case with I2000 compset
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./xmlchange RUN_STARTDATE=0001-01-01
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./xmlchange DATM_YR_ALIGN=1
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./xmlchange DATM_YR_START=2011
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fi
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# Turn on LAI streams for a SP case
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if [[ $compset =~ .*CLM[0-9]+%[^_]*SP.* ]]; then
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echo "stream_fldfilename_lai='\$DIN_LOC_ROOT/lnd/clm2/lai_streams/PLUMBER2/AU-ASM/LAI_stream_AU-ASM_2011-2017.nc'" >> user_nl_clm
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echo "stream_year_last_lai=2017" >> user_nl_clm
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if [[ $compset =~ ^HIST ]]; then
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# for transient case with a historical compset
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echo "model_year_align_lai=2010" >> user_nl_clm
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echo "stream_year_first_lai=2010" >> user_nl_clm
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else
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# for a spinup case with a i2000 compset
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echo "model_year_align_lai=1" >> user_nl_clm
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echo "stream_year_first_lai=2011" >> user_nl_clm
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fi
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fi
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‎cime_config/usermods_dirs/PLUMBER2/AU-Cow/include_user_mods‎

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../defaults

‎cime_config/usermods_dirs/PLUMBER2/AU-Cow/shell_commands‎

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./xmlchange PTS_LON=145.427155
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./xmlchange PTS_LAT=-16.23819
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./xmlchange DATM_YR_END=2015
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./xmlchange START_TOD=50400
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./xmlchange ATM_NCPL=48
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echo "fsurdat='/glade/u/home/wwieder/CTSM/tools/site_and_regional/subset_data_single_point/surfdata_1x1_PLUMBER2_AU-Cow_hist_16pfts_Irrig_CMIP6_simyr2000_c231005.nc ' " >> user_nl_clm
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echo "CLM_USRDAT.PLUMBER2:datafiles= \$DIN_LOC_ROOT/atm/datm7/CLM1PT_data/PLUMBER2/AU-Cow/CLM1PT_data/CTSM_DATM_AU-Cow_2010-2015.nc " >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_last=2015" >> user_nl_datm_streams
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echo "presaero.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_last=2015" >> user_nl_datm_streams
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echo "presndep.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_first=2010" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_last=2015" >> user_nl_datm_streams
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echo "co2tseries.SSP3-7.0:year_align=2010" >> user_nl_datm_streams
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compset=`./xmlquery COMPSET --value`
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CLM_USRDAT_NAME=`./xmlquery CLM_USRDAT_NAME --value`
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TEST=`./xmlquery TEST --value`
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# For a transient case run the whole length and do not cycle
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if [[ $compset =~ ^HIST ]]; then
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# Number of years that can be run for the full transient case
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if [[ $TEST != "TRUE" ]]; then
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./xmlchange STOP_N=6
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fi
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# set start date for transient case with historical compset
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./xmlchange RUN_STARTDATE=2009-12-31
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./xmlchange DATM_YR_ALIGN=2009
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./xmlchange DATM_YR_START=2009
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else
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# for spinup case with I2000 compset
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./xmlchange RUN_STARTDATE=0001-01-01
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./xmlchange DATM_YR_ALIGN=1
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./xmlchange DATM_YR_START=2010
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fi
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# Turn on LAI streams for a SP case
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if [[ $compset =~ .*CLM[0-9]+%[^_]*SP.* ]]; then
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echo "stream_fldfilename_lai='\$DIN_LOC_ROOT/lnd/clm2/lai_streams/PLUMBER2/AU-Cow/LAI_stream_AU-Cow_2010-2015.nc'" >> user_nl_clm
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echo "stream_year_last_lai=2015" >> user_nl_clm
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if [[ $compset =~ ^HIST ]]; then
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# for transient case with a historical compset
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echo "model_year_align_lai=2009" >> user_nl_clm
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echo "stream_year_first_lai=2009" >> user_nl_clm
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else
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# for a spinup case with a i2000 compset
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echo "model_year_align_lai=1" >> user_nl_clm
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echo "stream_year_first_lai=2010" >> user_nl_clm
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fi
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fi
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