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Update Zenodo DOI to v2.1.0
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CITATION.cff

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@@ -4,7 +4,7 @@ title: "SARS-CoV-2 Host Response in Nasopharyngeal RNA-seq (GSE152075)"
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type: software
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license: MIT
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repository-code: "https://github.com/Ekin-Kahraman/bulk-rnaseq-differential-expression"
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doi: "10.5281/zenodo.18432519"
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doi: "10.5281/zenodo.19429954"
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keywords:
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- "bioinformatics"
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- "computational biology"
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given-names: "Ekin"
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preferred-citation:
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type: dataset
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doi: "10.5281/zenodo.18432519"
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doi: "10.5281/zenodo.19429954"
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title: "SARS-CoV-2 Host Response in Nasopharyngeal RNA-seq (GSE152075)"
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authors:
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- family-names: "Kahraman"

README.md

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[![R](https://img.shields.io/badge/R-%E2%89%A54.0-blue)](https://www.r-project.org/)
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[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
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[![DOI](https://zenodo.org/badge/1142001317.svg)](https://doi.org/10.5281/zenodo.18432519)
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[![DOI](https://zenodo.org/badge/1142001317.svg)](https://doi.org/10.5281/zenodo.19429954)
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[![CI](https://github.com/Ekin-Kahraman/bulk-rnaseq-differential-expression/actions/workflows/ci.yml/badge.svg)](https://github.com/Ekin-Kahraman/bulk-rnaseq-differential-expression/actions/workflows/ci.yml)
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Reproducible bulk RNA-seq differential expression pipeline using DESeq2: QC, shrunken-effect DE analysis, pathway enrichment, and robustness benchmarking against the full QC-passed cohort.
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```
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## Citation Metadata
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- Zenodo DOI: `10.5281/zenodo.18432519`
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- Zenodo DOI: `10.5281/zenodo.19429954`
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- For citation tooling, see `CITATION.cff`
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## Project Structure
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## How to Cite
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This repository:
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> Kahraman, E. (2026). SARS-CoV-2 Host Response in Nasopharyngeal RNA-seq. Zenodo. https://doi.org/10.5281/zenodo.18432519
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> Kahraman, E. (2026). SARS-CoV-2 Host Response in Nasopharyngeal RNA-seq. Zenodo. https://doi.org/10.5281/zenodo.19429954
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Data from:
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> Lieberman NAP *et al.* (2020) In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age. *PLoS Biology* 18(9): e3000849. DOI: [10.1371/journal.pbio.3000849](https://doi.org/10.1371/journal.pbio.3000849)

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