ci: restore bulk rnaseq lockfile deterministically

Author: Ekin-Kahraman

.github/workflows/ci.yml

@@ -15,13 +15,20 @@ jobs:
       - name: Install system dependencies
         run: |
           sudo apt-get update
-          sudo apt-get install -y libglpk40
+          sudo apt-get install -y \
+            libcairo2-dev \
+            libcurl4-openssl-dev \
+            libfontconfig1-dev \
+            libglpk-dev \
+            libpng-dev \
+            libx11-dev \
+            pandoc
 
       - name: Setup R
         uses: r-lib/actions/setup-r@v2
         with:
           r-version: "4.5.2"
-          use-public-rspm: true
+          use-public-rspm: false
 
       - name: Restore renv packages
         uses: r-lib/actions/setup-renv@v2
@@ -53,13 +60,20 @@ jobs:
       - name: Install system dependencies
         run: |
           sudo apt-get update
-          sudo apt-get install -y libglpk40
+          sudo apt-get install -y \
+            libcairo2-dev \
+            libcurl4-openssl-dev \
+            libfontconfig1-dev \
+            libglpk-dev \
+            libpng-dev \
+            libx11-dev \
+            pandoc
 
       - name: Setup R
         uses: r-lib/actions/setup-r@v2
         with:
           r-version: "4.5.2"
-          use-public-rspm: true
+          use-public-rspm: false
 
       - name: Restore renv packages
         uses: r-lib/actions/setup-renv@v2