rnaseq-nextflow-pipeline/CITATION.cff at main · Ekin-Kahraman/rnaseq-nextflow-pipeline · GitHub

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cff-version: 1.2.0
message: "If you use this pipeline, please cite this repository and the exact commit or release you used."
title: "RNA-seq Nextflow Pipeline"
type: software
license: MIT
version: "1.0.0"
date-released: "2026-05-15"
repository-code: "https://github.com/Ekin-Kahraman/rnaseq-nextflow-pipeline"
url: "https://github.com/Ekin-Kahraman/rnaseq-nextflow-pipeline"
abstract: "A reproducible Nextflow DSL2 RNA-seq workflow for paired-end FASTQ quality control, trimming, HISAT2 alignment, featureCounts quantification, DESeq2 differential expression, MultiQC reporting, and cloud-ready execution."
keywords:
  - bioinformatics
  - RNA-seq
  - Nextflow
  - DESeq2
  - MultiQC
  - AWS Batch
authors:
  - family-names: "Kahraman"
    given-names: "Ekin"
    affiliation: "University of East Anglia"
    email: "evk23umu@uea.ac.uk"