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# Single-Cell RNA-seq Immune Cell Profiling
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[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)
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[![Python](https://img.shields.io/badge/Python-3.10%2B-blue)](https://www.python.org/)
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End-to-end single-cell RNA-seq analysis pipeline in Python using [scanpy](https://scanpy.readthedocs.io/). Quality control, normalisation, dimensionality reduction, unsupervised clustering with automated resolution selection, and marker-based cell type annotation on human peripheral blood mononuclear cells.
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