Merge pull request #1 from Ekin-Kahraman/fix/figure-naming-and-deps

Fix figure filename prefix and add imageio dependency

Author: Ekin-Kahraman

pyproject.toml

@@ -35,6 +35,7 @@ Repository = "https://github.com/Ekin-Kahraman/single-cell-rnaseq-immune-profili
 
 [project.optional-dependencies]
 dev = ["pytest>=7.0", "pytest-cov>=4.0"]
+viz = ["imageio>=2.14"]
 
 [tool.pytest.ini_options]
 testpaths = ["tests"]

scripts/08_publication_figures.py

@@ -106,11 +106,11 @@ def make_figure(adata):
         ax_e.text(0.1, y, label, fontsize=11, fontweight="bold", transform=ax_e.transAxes)
         ax_e.text(0.6, y, value, fontsize=11, transform=ax_e.transAxes)
 
-    fig.savefig(FIG_DIR / "06_publication_figure.png", dpi=300, bbox_inches="tight")
-    fig.savefig(FIG_DIR / "06_publication_figure.pdf", bbox_inches="tight")
+    fig.savefig(FIG_DIR / "08_publication_figure.png", dpi=300, bbox_inches="tight")
+    fig.savefig(FIG_DIR / "08_publication_figure.pdf", bbox_inches="tight")
     plt.close(fig)
-    print(f"Saved publication figure to {FIG_DIR / '06_publication_figure.png'}")
-    print(f"Saved publication figure to {FIG_DIR / '06_publication_figure.pdf'}")
+    print(f"Saved publication figure to {FIG_DIR / '08_publication_figure.png'}")
+    print(f"Saved publication figure to {FIG_DIR / '08_publication_figure.pdf'}")
 
 
 def main():