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repeats/README.md

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@@ -59,11 +59,11 @@ such as the library **nrTEplants**. The script does not load the resulting annot
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./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna test_Atha_chr4 --bed_file test.bed
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# consider only repeats with length >= 200 bp
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./AnnotRedRepeats.py files/nrTEplantsJune2020.fna Brachypodium_distachyon --cor 4 \
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./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna Brachypodium_distachyon --cor 4 \
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--minlen 200
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# add annotated repeats to Ensembl core db and use a different minimap2 binary
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./AnnotRedRepeats.py files/nrTEplantsJune2020.fna Brachypodium_distachyon --exe /path/to/minimap2 --cor 4 \
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./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna Brachypodium_distachyon --exe /path/to/minimap2 --cor 4 \
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--host pl1 --user xyz --pw XYZ \
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--port 123 --db brachypodium_distachyon_core_49_102
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```

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