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NMDC Sediment value sets classes plus repair/enhancement to NMDC PlantAssociated value sets
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‎src/envo/envo-edit.owl‎

Lines changed: 38 additions & 1 deletion
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@@ -26,8 +26,8 @@ Import(<http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/robot_templates/nmdc_env_context_subset_membership.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl>)
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Import(<http://purl.obolibrary.org/obo/envo/robot_templates/nmdc_env_context_subset_membership.owl>)
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Annotation(<http://purl.org/dc/elements/1.1/contributor> <https://orcid.org/0000-0002-2996-719X>)
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Annotation(<http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0002-4366-3088>)
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Annotation(<http://purl.org/dc/elements/1.1/creator> "http://orcid.org/0000-0002-6601-2165")
@@ -4479,9 +4479,13 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605016>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605017>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605018>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605019>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605020>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605021>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605022>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605023>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605024>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605025>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605026>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000116>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000232>))
@@ -4605,7 +4609,9 @@ SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605015> <http://p
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605016> (NMDC PlantAssociated value sets)
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AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605016> "Subset of NMDC environmental context value sets for annotating EnvO classes suitable for MIxS environmental context fields related to plant-associated samples. Recommended for use in metadata preparation for repositories like NCBI BioSample.")
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605016> "NMDC PlantAssociated value sets"@en)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605016> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605016> <http://purl.obolibrary.org/obo/ENVO_03605010>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605017> (NMDC Water broad scale value set)
@@ -4635,6 +4641,21 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605019>
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605019> <https://microbiomedata.github.io/submission-schema/EnvMediumWaterEnum/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605019> <http://purl.obolibrary.org/obo/ENVO_03605012>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605020> (NMDC Sediment value sets)
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AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605020> "Subset of NMDC environmental context value sets for annotating EnvO classes suitable for MIxS environmental context fields related to sediment samples. Recommended for use in metadata preparation for repositories like NCBI BioSample.")
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605020> "NMDC Sediment value sets"@en)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605020> <https://genomicsstandardsconsortium.github.io/mixs/0016011/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605020> <http://purl.obolibrary.org/obo/ENVO_03605010>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605021> (NMDC Sediment broad scale value set)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605021> "NMDC Sediment broad scale value set")
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://genomicsstandardsconsortium.github.io/mixs/0000012/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://microbiomedata.github.io/submission-schema/EnvBroadScaleSedimentEnum/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605021> <http://purl.obolibrary.org/obo/ENVO_03605020>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605022> (NMDC PlantAssociated broad scale value set)
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AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605022> "Used to annotate EnvO classes appropriate for the MIxS env_broad_scale field in plant associated sample records. Supports consistent metadata annotation for systems like NCBI BioSample.")
@@ -4662,6 +4683,22 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605024>
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605024> <https://microbiomedata.github.io/submission-schema/EnvMediumPlantAssociatedEnum/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605024> <http://purl.obolibrary.org/obo/ENVO_03605016>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605025> (NMDC Sediment local scale value set)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605025> "NMDC Sediment local scale value set"@en)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://genomicsstandardsconsortium.github.io/mixs/0000013/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://microbiomedata.github.io/submission-schema/EnvLocalScaleSedimentEnum/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605025> <http://purl.obolibrary.org/obo/ENVO_03605020>)
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# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605026> (NMDC Sediment environmental medium value set)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605026> "NMDC Sediment environmental medium value set"@en)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://genomicsstandardsconsortium.github.io/mixs/0000014/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
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AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://microbiomedata.github.io/submission-schema/EnvMediumSedimentEnum/>)
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SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605026> <http://purl.obolibrary.org/obo/ENVO_03605020>)
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# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000112> (example of usage)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000112> "example of usage")

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