Skip to content

Commit a377739

Browse files
NIU1636242NIU1636242
committed
Eliminar write button + steps acabados
1 parent b18675d commit a377739

File tree

11 files changed

+547
-631
lines changed

11 files changed

+547
-631
lines changed

‎curation-pipeline/src/components/steps/Step1Publication.jsx‎

Lines changed: 46 additions & 62 deletions
Original file line numberDiff line numberDiff line change
@@ -1,30 +1,32 @@
11
import { useState, useEffect } from "react";
22
import { useCuration } from "../../context/CurationContext";
33

4+
const PROXY = "https://corsproxy.io/?";
5+
const BASE = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils";
6+
47
export default function Step1Publication() {
58
const { publication, setPublication, goToNextStep } = useCuration();
69

7-
const [query, setQuery] = useState(""); //input
8-
const [loading, setLoading] = useState(false); //si està buscant
10+
// Estat local del formulari
11+
const [query, setQuery] = useState("");
12+
const [loading, setLoading] = useState(false);
913
const [article, setArticle] = useState(null);
1014
const [error, setError] = useState("");
1115

12-
const PROXY = "https://corsproxy.io/?";
13-
const BASE = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils";
14-
15-
useEffect(() => { //mostra dades al anar enrere
16-
if (publication) {
17-
setArticle({
18-
...publication,
19-
doi: normalizeDOI(publication.doi),
20-
});
21-
if (publication.pmid) setQuery(publication.pmid);
22-
else if (publication.doi) setQuery(publication.doi);
23-
}
24-
}, [publication]);
16+
// Quan tornem enrere al pipeline, recuperem les dades guardades
17+
useEffect(() => {
18+
if (!publication) return;
2519

20+
setArticle({
21+
...publication,
22+
doi: normalizeDOI(publication.doi),
23+
});
24+
25+
if (publication.pmid) setQuery(publication.pmid);
26+
else if (publication.doi) setQuery(publication.doi);
27+
}, [publication]);
2628

27-
//Main search function (PMID, DOI o TITLE)
29+
// Cerca principal: pot ser PMID, DOI o títol
2830
async function handleSearch(e) {
2931
e.preventDefault();
3032
setError("");
@@ -40,14 +42,14 @@ export default function Step1Publication() {
4042
const isPMID = /^\d+$/.test(q);
4143
const isDOI = q.includes("/");
4244

43-
// SEARCH BY PMID
45+
// Cerca directa per PMID
4446
if (isPMID) {
4547
const url = `${BASE}/esummary.fcgi?db=pubmed&id=${q}&retmode=json`;
4648
const res = await fetch(PROXY + encodeURIComponent(url));
4749
const json = await res.json();
4850
const rec = json.result?.[q];
4951

50-
if (!rec) throw new Error("PMID not found.");
52+
if (!rec) throw new Error("PMID no trobat");
5153

5254
data = {
5355
pmid: q,
@@ -59,9 +61,8 @@ export default function Step1Publication() {
5961
};
6062
}
6163

62-
// SEARCH BY DOI (PubMed → fallback CrossRef)
64+
// Cerca per DOI (primer PubMed, després CrossRef)
6365
if (!data && isDOI) {
64-
// Try PubMed first
6566
const esearchUrl = `${BASE}/esearch.fcgi?db=pubmed&retmode=json&term=${encodeURIComponent(
6667
q
6768
)}[doi]`;
@@ -84,38 +85,33 @@ export default function Step1Publication() {
8485
journal: rec.fulljournalname || "Unknown",
8586
pubdate: rec.pubdate || "No date",
8687
doi: normalizeDOI(rec.elocationid || q),
87-
8888
};
8989
}
9090
}
9191

92-
// Fallback: CrossRef
92+
// Fallback a CrossRef si PubMed no retorna res
9393
if (!data) {
94-
const crUrl = `https://api.crossref.org/works/${encodeURIComponent(
95-
q
96-
)}`;
94+
const crUrl = `https://api.crossref.org/works/${encodeURIComponent(q)}`;
9795
const crRes = await fetch(PROXY + encodeURIComponent(crUrl));
9896
const crJson = await crRes.json();
9997
const m = crJson.message;
10098

101-
if (!m) throw new Error("DOI not found in CrossRef.");
99+
if (!m) throw new Error("DOI no trobat a CrossRef");
102100

103101
data = {
104102
pmid: null,
105103
title: m.title?.[0] || "Title not available",
106104
authors: (m.author || [])
107105
.map((a) => `${a.family || ""} ${a.given || ""}`)
108106
.join(", "),
109-
journal:
110-
m["container-title"]?.[0] || "Unknown journal",
111-
pubdate:
112-
m.issued?.["date-parts"]?.[0]?.join("-") || "No date",
107+
journal: m["container-title"]?.[0] || "Unknown journal",
108+
pubdate: m.issued?.["date-parts"]?.[0]?.join("-") || "No date",
113109
doi: q,
114110
};
115111
}
116112
}
117113

118-
// SEARCH BY TITLE (PubMed)
114+
// Cerca per títol (PubMed)
119115
if (!data && !isPMID && !isDOI) {
120116
const esearchUrl = `${BASE}/esearch.fcgi?db=pubmed&retmode=json&retmax=1&term=${encodeURIComponent(
121117
q
@@ -125,9 +121,7 @@ export default function Step1Publication() {
125121
const js1 = await r1.json();
126122
const pmid = js1.esearchresult?.idlist?.[0];
127123

128-
if (!pmid) {
129-
throw new Error("No PubMed articles found with this title.");
130-
}
124+
if (!pmid) throw new Error("Cap article trobat amb aquest títol");
131125

132126
const esumUrl = `${BASE}/esummary.fcgi?db=pubmed&id=${pmid}&retmode=json`;
133127
const r2 = await fetch(PROXY + encodeURIComponent(esumUrl));
@@ -144,31 +138,31 @@ export default function Step1Publication() {
144138
};
145139
}
146140

147-
if (!data) throw new Error("No results found.");
141+
if (!data) throw new Error("Sense resultats");
148142

149143
setArticle(data);
150144
} catch (e) {
151145
console.error(e);
152146
setError(
153-
"Error searching the article. Please enter a PMID, DOI or article title."
147+
"Error cercant l’article. Introdueix un PMID, un DOI o el títol."
154148
);
155149
} finally {
156150
setLoading(false);
157151
}
158152
}
159153

154+
// Normalitza el DOI quan ve incrustat en altres camps
160155
function normalizeDOI(raw) {
161-
if (!raw) return "No DOI";
156+
if (!raw) return "";
162157
const m = raw.match(/10\.\d{4,9}\/\S+/i);
163158
return m ? m[0] : raw;
164159
}
165160

166-
const handleConfirm = () => {
167-
if (article) {
168-
setPublication(article);
169-
goToNextStep();
170-
}
171-
};
161+
function handleConfirm() {
162+
if (!article) return;
163+
setPublication(article);
164+
goToNextStep();
165+
}
172166

173167
return (
174168
<div className="space-y-4">
@@ -177,12 +171,12 @@ export default function Step1Publication() {
177171
<div className="flex gap-2">
178172
<input
179173
className="form-control"
180-
placeholder="PMID, DOI or article title"
174+
placeholder="PMID, DOI o títol de l’article"
181175
value={query}
182176
onChange={(e) => setQuery(e.target.value)}
183177
/>
184178
<button className="btn" onClick={handleSearch} disabled={loading}>
185-
{loading ? "Searching..." : "Search"}
179+
{loading ? "Cercant..." : "Cerca"}
186180
</button>
187181
</div>
188182

@@ -192,33 +186,23 @@ export default function Step1Publication() {
192186
rel="noopener noreferrer"
193187
className="inline-block text-sm text-blue-400 hover:text-blue-300 underline mt-1"
194188
>
195-
Search article directly on PubMed
189+
Cercar directament a PubMed
196190
</a>
197191

198192
{error && <p className="text-red-400">{error}</p>}
199193

200194
{article && (
201195
<div className="bg-surface border border-border rounded p-4 space-y-1">
202196
<h3 className="text-xl font-semibold">{article.title}</h3>
203-
<p>
204-
<strong>Authors:</strong> {article.authors}
205-
</p>
206-
<p>
207-
<strong>Journal:</strong> {article.journal}
208-
</p>
209-
<p>
210-
<strong>Date:</strong> {article.pubdate}
211-
</p>
212-
<p>
213-
<strong>PMID:</strong> {article.pmid || "—"}
214-
</p>
215-
<p>
216-
<strong>DOI:</strong> {article.doi}
217-
</p>
197+
<p><strong>Autors:</strong> {article.authors}</p>
198+
<p><strong>Revista:</strong> {article.journal}</p>
199+
<p><strong>Data:</strong> {article.pubdate}</p>
200+
<p><strong>PMID:</strong> {article.pmid || "—"}</p>
201+
<p><strong>DOI:</strong> {article.doi || "—"}</p>
218202

219203
<div className="pt-3">
220204
<button className="btn" onClick={handleConfirm}>
221-
Confirm and continue →
205+
Confirmar i continuar →
222206
</button>
223207
</div>
224208
</div>

0 commit comments

Comments
 (0)