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Merge pull request #2265 from FCP-INDI/fix/ccs-options-brain-masking #245

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Merge pull request #2265 from FCP-INDI/fix/ccs-options-brain-masking

Merge pull request #2265 from FCP-INDI/fix/ccs-options-brain-masking #245

Triggered via push July 28, 2025 22:45
@sgiavasissgiavasis
pushed 1d39110
develop
Status Failure
Total duration 20h 52m 59s
Artifacts 21

on_push.yaml

on: push
Check if preconfigs need updated
6s
Check if preconfigs need updated
check_pr
7s
check_pr
Matrix: Build multistage image stages / Build C-PAC stage images for Ubuntu & FSL data
Build multistage image stages  /  check_test_mode
4s
Build multistage image stages / check_test_mode
Matrix: Build multistage image stages / Build C-PAC Docker stage images for dependencies
Matrix: Build multistage image stages / Build C-PAC base stage images
Build multistage image stages  /  ...  /  Build Docker C-PAC images
4m 30s
Build multistage image stages / C-PAC-lite / Build Docker C-PAC images
Build multistage image stages  /  Build C-PAC standard base stage image
53s
Build multistage image stages / Build C-PAC standard base stage image
Build multistage image stages  /  ...  /  Deploy to Docker Hub
Build multistage image stages / Deploy 'lite' to Docker Hub / Deploy to Docker Hub
Build multistage image stages  /  ...  /  Build Docker C-PAC images
4m 34s
Build multistage image stages / C-PAC / Build Docker C-PAC images
Build multistage image stages  /  Run tests on CircleCI
25s
Build multistage image stages / Run tests on CircleCI
Matrix: Build multistage image stages / Run participant-level smoke tests / smoke_test_human
Matrix: Build multistage image stages / Run participant-level smoke tests / smoke_test_nhp
Matrix: Build multistage image stages / Run participant-level smoke tests / Rodent participant smoke tests
Build multistage image stages  /  ...  /  Deploy to Docker Hub
Build multistage image stages / Deploy to Docker Hub / Deploy to Docker Hub
Build multistage image stages  /  ...  /  Regression Test - lite
1m 20s
Build multistage image stages / Run regression and integration test / Regression Test - lite
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Event Environments Comment
@shnizzedy
shnizzedy
approved Jul 29, 2025
ACCESS

Annotations

2 errors and 7 warnings
Build multistage image stages / Run participant-level smoke tests / Rodent participant smoke tests
Process completed with exit code 1.
Build multistage image stages / Run participant-level smoke tests / Human ccs-options participant smoke tests
Process completed with exit code 137.
The 'as' keyword should match the case of the 'from' keyword: .github/Dockerfiles/connectome-workbench.1.5.0.neurodebian-jammy.Dockerfile#L17
FromAsCasing: 'as' and 'FROM' keywords' casing do not match More info: https://docs.docker.com/go/dockerfile/rule/from-as-casing/
Build multistage image stages / Run participant-level smoke tests / Rodent participant smoke tests
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Build multistage image stages / Run participant-level smoke tests / Rodent participant smoke tests
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Build multistage image stages / Run participant-level smoke tests / Non-human primate monkey participant smoke tests
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Build multistage image stages / Run participant-level smoke tests / Non-human primate monkey participant smoke tests
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Build multistage image stages / Run participant-level smoke tests / Non-human primate nhp-macaque participant smoke tests
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Build multistage image stages / Run participant-level smoke tests / Non-human primate nhp-macaque participant smoke tests
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size Digest
FCP-INDI~C-PAC~5OI6DD.dockerbuild Expired
67.9 KB
sha256:ce1bdaaa67ff0623e64305219c1e581111ee57864c012ff8668fba5f0b560a09
FCP-INDI~C-PAC~K004CU.dockerbuild Expired
196 KB
sha256:754d23ce06954d070c07ba90da70b06befa2072509dc73b624a616c8040e33d5
FCP-INDI~C-PAC~UZJ79G.dockerbuild Expired
179 KB
sha256:26d1a820e2050a4d84e9b9b906f370ad95e740a5579792b33fd912b11a62a8f8
expectedOutputs human abcd-options 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
66.6 KB
sha256:ea1a60a7dd31b4d69f72df43b2b2504ac746c6c34f951231dd545c76ec6b156b
expectedOutputs human anat-only 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
26.5 KB
sha256:f9144197e8f911f23e84a01eed88d4ec0a4a869e995ae7a1af3daf8ead20abdd
expectedOutputs human benchmark-ANTS 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
94.2 KB
sha256:025c625696da24910a4b04962dc0f54ad99abf13bd6a868a3e36c3527573de64
expectedOutputs human benchmark-FNIRT 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
92.3 KB
sha256:213a5aba9940151dfbc28438e9baef074011978694b6a2c42ae84702cbda6a87
expectedOutputs human blank 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
15.3 KB
sha256:87fffceea1bba77775305331a6964e100074101c1ff7abb2de5495aa7f7bc42d
expectedOutputs human default 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
61.1 KB
sha256:47977c98427b21aca9c8bff4052ee6354eb1eacaa525bb22d11ce9691ed80f33
expectedOutputs human default lite 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
61.1 KB
sha256:de1ec4d038f948706edf6e71b2711b7d9aaef946fc9115a77ff15587728afa3d
expectedOutputs human fmriprep-options 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
36.8 KB
sha256:163f96d3f1d6c3ab3b5c3e14e694c89d4b62e087c78144904932f67c41cb7919
expectedOutputs human fx-options 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
36.1 KB
sha256:d0a21ba6b4feafc7c158de986a1db869496e8ee65b971bd714910b35e3e31a2d
expectedOutputs human ndmg 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
38.3 KB
sha256:be21f4ddeb6d6f7d4d659dc976e0226dcfcbf14ec04c4fa7f5570c2e6a64588d
expectedOutputs human preproc 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
40.3 KB
sha256:53c10caa2cbf79102f23af62db484f5453a84a3bda3f19f0579463ca208e05af
expectedOutputs human rbc-options 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
50.6 KB
sha256:2ea604f5c7b912faccfa2dd3a8f6f96abfdcf70c1c814870426416e79eb91211
expectedOutputs human regtest-1 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
93.3 KB
sha256:0d600f3941e2b90755a89ec246510a98792a1aa67f38cde8971ffb0ef7998808
expectedOutputs human regtest-2 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
91.4 KB
sha256:fb38102192ef407ccf122558f97311a51743fabb0a0b58d53765291cf8070fd3
expectedOutputs human regtest-3 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
93.3 KB
sha256:39529a61c8ca3ea07743d809778e28c3bf7e77439eb072f3b564024203d74a30
expectedOutputs human regtest-4 1019436 2014113 3154996 3699991 3884955 NDARAA504CRN NDARAA947ZG5 NDARAB348EWR NDARAB458VK9 NDARAD481FXF NDARAV894XWD NDARCA186WGH 0025428 0025429 0025448 0025452 0025453 Expired
97.6 KB
sha256:6cb004726ec3d096c465fc010d50e6ee8d642b582b01f0165b5e1850b5132ce1
expectedOutputs nhp monkey 032102 032106 032164 032167 032130 032128 2215 2312 032191 032195 Expired
6.45 KB
sha256:ba97716abe5424d87175e19fbdffd514383f5f55bccb4a0cea8470843870a02a
expectedOutputs nhp nhp-macaque 032102 032106 032164 032167 032130 032128 2215 2312 032191 032195 Expired
6.47 KB
sha256:790bae37f3d6123a9152b0b886923cc7a1b5b71f6742f25b9e1a48da0b69416a