C-PAC/CPAC/resources/configs/pipeline_config_fx-options.yml at 17ae48897190bf813a6d11b03423f04b10112da1 · FCP-INDI/C-PAC · GitHub

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%YAML 1.1
---
# CPAC Pipeline Configuration YAML file
# Version 1.8.8.dev2
#
# http://fcp-indi.github.io for more info.
#
# Tip: This file can be edited manually with a text editor for quick modifications.
FROM: fmriprep-options

pipeline_setup:

  # Name for this pipeline configuration - useful for identification.
  # This string will be sanitized and used in filepaths
  pipeline_name: cpac_fx-options
  output_directory:

    # Quality control outputs
    quality_control:

      # Generate eXtensible Connectivity Pipeline-style quality control files
      generate_xcpqc_files: On

nuisance_corrections:
  2-nuisance_regression:

    # this is a fork point
    #   run: [On, Off] - this will run both and fork the pipeline
    run: [On]

    # Select which nuisance signal corrections to apply
    Regressors:
      - Name: Regressor_1
        Bandpass:
          bottom_frequency: 0.01
          top_frequency: 0.08
        CerebrospinalFluid:
          erode_mask: Off
          extraction_resolution: 2
          include_delayed: On
          include_delayed_squared: On
          include_squared: On
          summary: Mean
        GlobalSignal:
          include_delayed: On
          include_delayed_squared: On
          include_squared: On
          summary: Mean
        Motion:
          include_delayed: On
          include_delayed_squared: On
          include_squared: On
        WhiteMatter:
          erode_mask: Off
          extraction_resolution: 2
          include_delayed: On
          include_delayed_squared: On
          include_squared: On
          summary: Mean
        PolyOrt:
          degree: 2