[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

CPAC/func_preproc/func_preproc.py

@@ -1926,9 +1926,7 @@ def template_space_bold_masking(
     func_apply_mask.inputs.expr = "a*b"
     func_apply_mask.inputs.outputtype = "NIFTI_GZ"
 
-    node_head_bold, out_head_bold = strat_pool.get_data(
-        "space-template_desc-head_bold"
-    )
+    node_head_bold, out_head_bold = strat_pool.get_data("space-template_desc-head_bold")
     wf.connect(node_head_bold, out_head_bold, func_apply_mask, "in_file_a")
 
     node, out = strat_pool.get_data("space-template_desc-bold_mask")

CPAC/pipeline/cpac_pipeline.py

@@ -1484,7 +1484,7 @@ def build_workflow(subject_id, sub_dict, cfg, pipeline_name=None):
         pipeline_blocks += [
             template_space_bold_masking,
         ]
-        
+
     # Template-space nuisance regression
     nuisance_template = (
         cfg["nuisance_corrections", "2-nuisance_regression", "space"] == "template"

CPAC/registration/registration.py

@@ -4235,7 +4235,8 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out,
+        node,
+        out,
         convert_func_to_standard_warp,
         "reference",
     )
@@ -4303,7 +4304,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out, convert_registration_warp, "reference",
+        node,
+        out,
+        convert_registration_warp,
+        "reference",
     )
 
     wf.connect(
@@ -4343,7 +4347,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out, applywarp_func_to_standard, "ref_file",
+        node,
+        out,
+        applywarp_func_to_standard,
+        "ref_file",
     )
 
     # applywarp --rel --interp=nn --in=${WD}/prevols/vol${vnum}_mask.nii.gz --warp=${MotionMatrixFolder}/${MotionMatrixPrefix}${vnum}_all_warp.nii.gz --ref=${WD}/${T1wImageFile}.${FinalfMRIResolution} --out=${WD}/postvols/vol${vnum}_mask.nii.gz
@@ -4369,7 +4376,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out, applywarp_func_mask_to_standard, "ref_file",
+        node,
+        out,
+        applywarp_func_mask_to_standard,
+        "ref_file",
     )
 
     ### Loop ends! ###
@@ -4419,7 +4429,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out, convert_dc_warp, "reference",
+        node,
+        out,
+        convert_dc_warp,
+        "reference",
     )
 
     wf.connect(multiply_func_roi_by_zero, "out_file", convert_dc_warp, "warp1")
@@ -4439,7 +4452,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_res-bold_desc-head_T1w")
     wf.connect(
-        node, out, applywarp_scout, "ref_file",
+        node,
+        out,
+        applywarp_scout,
+        "ref_file",
     )
 
     wf.connect(convert_dc_warp, "out_file", applywarp_scout, "field_file")
@@ -4450,7 +4466,10 @@ def warp_timeseries_to_T1template_abcd(wf, cfg, strat_pool, pipe_num, opt=None):
 
     node, out = strat_pool.get_data("space-template_desc-bold_mask")
     wf.connect(
-        node, out, merge_func_mask, "in1",
+        node,
+        out,
+        merge_func_mask,
+        "in1",
     )
 
     wf.connect(find_min_mask, "out_file", merge_func_mask, "in2")