Update CPAC/pipeline/engine.py

birajstha · shnizzedy · web-flow · commit 325deb5170ed · 2025-03-24T16:28:33.000-04:00
Co-authored-by: Jon Cluce &lt;jon.clucas@childmind.org&gt;
diff --git a/CPAC/pipeline/engine.py b/CPAC/pipeline/engine.py
@@ -2045,7 +2045,7 @@ def ingress_freesurfer(wf, rpool, cfg, data_paths, unique_id, part_id, ses_id):
                 creds_path=data_paths["creds_path"],
                 dl_dir=cfg.pipeline_setup["working_directory"]["path"],
             )
-            # if .mgz reorient to RPI
+            # reorient *.mgz
             if outfile.endswith(".mgz"):
                 reorient_mgz = pe.Node(
                     Function(

Original file line number	Diff line number	Diff line change
`@@ -2045,7 +2045,7 @@ def ingress_freesurfer(wf, rpool, cfg, data_paths, unique_id, part_id, ses_id):`
`2045`	`2045`	`creds_path=data_paths["creds_path"],`
`2046`	`2046`	`dl_dir=cfg.pipeline_setup["working_directory"]["path"],`
`2047`	`2047`	`)`
`2048`		`- # if .mgz reorient to RPI`
	`2048`	`+ # reorient *.mgz`
`2049`	`2049`	`if outfile.endswith(".mgz"):`
`2050`	`2050`	`reorient_mgz = pe.Node(`
`2051`	`2051`	`Function(`