🔧 Turn on XCP-QC by default in preconfigs (#2204)

Author: shnizzedy

CHANGELOG.md

@@ -43,6 +43,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
   - Renamed `desc-ref_bold` created in this workflow to `desc-unifized_bold`.
   - `coregistration_prep_fmriprep` nodeblock now checks if `desc-unifized_bold` exists in the Resource Pool, if not it runs the `FSL-AFNI subworkflow` to create it.
 - Input `desc-brain_bold` to `desc-preproc_bold` for `sbref` generation nodeblock `coregistration_prep_vol`.
+- Turned `generate_xcpqc_files` on for all preconfigurations except `blank`.
 
 ### Fixed
 

CPAC/resources/configs/pipeline_config_abcd-options.yml

@@ -13,6 +13,10 @@ pipeline_setup:
   # Name for this pipeline configuration - useful for identification.
   # This string will be sanitized and used in filepaths
   pipeline_name: cpac_abcd-options
+  output_directory:
+    quality_control:
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
   system_config:
 
     # The maximum amount of memory each participant's workflow can allocate.

CPAC/resources/configs/pipeline_config_abcd-prep.yml

@@ -13,6 +13,10 @@ pipeline_setup:
   # Name for this pipeline configuration - useful for identification.
   # This string will be sanitized and used in filepaths
   pipeline_name: cpac_abcd-prep
+  output_directory:
+    quality_control:
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
   system_config:
 
     # The maximum amount of memory each participant's workflow can allocate.

CPAC/resources/configs/pipeline_config_benchmark-ANTS.yml

@@ -21,6 +21,9 @@ pipeline_setup:
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
 
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
+
     # Include extra versions and intermediate steps of functional preprocessing in the output directory.
     write_func_outputs: On
 

CPAC/resources/configs/pipeline_config_benchmark-FNIRT.yml

@@ -21,6 +21,9 @@ pipeline_setup:
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
 
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
+
     # Include extra versions and intermediate steps of functional preprocessing in the output directory.
     write_func_outputs: On
 

CPAC/resources/configs/pipeline_config_ccs-options.yml

@@ -21,6 +21,9 @@ pipeline_setup:
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
 
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
+
     # Include extra versions and intermediate steps of functional preprocessing in the output directory.
     write_func_outputs: On
 

CPAC/resources/configs/pipeline_config_default-deprecated.yml

@@ -21,6 +21,9 @@ pipeline_setup:
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
 
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
+
 anatomical_preproc:
   run: On
   acpc_alignment:

CPAC/resources/configs/pipeline_config_default.yml

@@ -54,10 +54,10 @@ pipeline_setup:
     # Quality control outputs
     quality_control:
       # Generate quality control pages containing preprocessing and derivative outputs.
-      generate_quality_control_images: True
+      generate_quality_control_images: On
 
       # Generate eXtensible Connectivity Pipeline-style quality control files
-      generate_xcpqc_files: False
+      generate_xcpqc_files: On
 
   working_directory:
 

CPAC/resources/configs/pipeline_config_fmriprep-ingress.yml

@@ -21,6 +21,9 @@ pipeline_setup:
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
 
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
+
   outdir_ingress:
     run: On
     Template: MNI152NLin2009cAsym

CPAC/resources/configs/pipeline_config_fmriprep-options.yml

@@ -13,6 +13,10 @@ pipeline_setup:
   # Name for this pipeline configuration - useful for identification.
   # This string will be sanitized and used in filepaths
   pipeline_name: cpac_fmriprep-options
+  output_directory:
+    quality_control:
+      # Generate eXtensible Connectivity Pipeline-style quality control files
+      generate_xcpqc_files: On
   system_config:
 
     # Select Off if you intend to run CPAC on a single machine.