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🐛 Update resources to resolve failing smoke tests (#2202)
2 parents 815e53f + f7ba07b commit 7523a5c

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1 file changed

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CPAC/registration/registration.py

Lines changed: 22 additions & 20 deletions
Original file line numberDiff line numberDiff line change
@@ -1601,7 +1601,7 @@ def FSL_registration_connector(
16011601
fnirt_reg_anat_mni,
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"outputspec.output_head",
16031603
),
1604-
f"space-{sym}template_desc-{orig}_mask": (
1604+
f"space-{sym}template_desc-{'brain' if orig == 'T1w' else orig}_mask": (
16051605
fnirt_reg_anat_mni,
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"outputspec.output_mask",
16071607
),
@@ -2318,26 +2318,28 @@ def register_FSL_anat_to_template(wf, cfg, strat_pool, pipe_num, opt=None):
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"dilated-symmetric-brain-mask",
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],
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outputs={
2321-
"space-symtemplate_desc-preproc_T1w": {
2322-
"Template": "T1w-brain-template-symmetric"
2323-
},
2324-
"from-T1w_to-symtemplate_mode-image_desc-linear_xfm": {
2325-
"Template": "T1w-template-symmetric"
2326-
},
2327-
"from-symtemplate_to-T1w_mode-image_desc-linear_xfm": {
2328-
"Template": "T1w-template-symmetric"
2329-
},
2330-
"from-T1w_to-symtemplate_mode-image_xfm": {
2331-
"Template": "T1w-template-symmetric"
2332-
},
2333-
"from-longitudinal_to-symtemplate_mode-image_desc-linear_xfm": {
2334-
"Template": "T1w-template-symmetric"
2335-
},
2336-
"from-symtemplate_to-longitudinal_mode-image_desc-linear_xfm": {
2337-
"Template": "T1w-template-symmetric"
2321+
**{
2322+
f"space-symtemplate_desc-{suffix}": {
2323+
"Template": "T1w-brain-template-symmetric"
2324+
}
2325+
for suffix in [
2326+
*[f"{desc}_T1w" for desc in ["brain", "preproc"]],
2327+
"brain_mask",
2328+
]
23382329
},
2339-
"from-longitudinal_to-symtemplate_mode-image_xfm": {
2340-
"Template": "T1w-template-symmetric"
2330+
**{
2331+
output: {"Template": "T1w-template-symmetric"}
2332+
for output in [
2333+
"space-symtemplate_desc-head_T1w",
2334+
"from-T1w_to-symtemplate_mode-image_desc-linear_xfm",
2335+
"from-symtemplate_to-T1w_mode-image_desc-linear_xfm",
2336+
"from-T1w_to-symtemplate_mode-image_warp",
2337+
"from-T1w_to-symtemplate_mode-image_xfm",
2338+
"from-longitudinal_to-symtemplate_mode-image_desc-linear_xfm",
2339+
"from-symtemplate_to-longitudinal_mode-image_desc-linear_xfm",
2340+
"from-longitudinal_to-symtemplate_mode-image_xfm",
2341+
"space-symtemplate_desc-T1wT2w_biasfield",
2342+
]
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},
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},
23432345
)

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