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birajsthashnizzedy
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moving the node declaration inside the if block
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CPAC/pipeline/engine.py

Lines changed: 12 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -1233,19 +1233,6 @@ def gather_pipes(self, wf, cfg, all=False, add_incl=None, add_excl=None):
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wf.connect(id_string, 'out_filename', write_json, 'filename')
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1236-
# Node to validate TR (and other scan parameters)
1237-
validate_bold_header = pe.Node(
1238-
Function(
1239-
input_names=["input_bold", "RawSource_bold"],
1240-
output_names=["output_bold"],
1241-
function=validate_outputs,
1242-
imports=[
1243-
"from CPAC.pipeline.utils import find_pixdim4, update_pixdim4"
1244-
],
1245-
),
1246-
name=f"validate_bold_header_{resource_idx}_{pipe_x}",
1247-
)
1248-
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ds = pe.Node(DataSink(), name=f'sinker_{resource_idx}_'
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f'{pipe_x}')
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ds.inputs.parameterization = False
@@ -1263,6 +1250,18 @@ def gather_pipes(self, wf, cfg, all=False, add_incl=None, add_excl=None):
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template_desc=id_string.inputs.template_desc,
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atlas_id=atlas_id, subdir=out_dct['subdir']))
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if resource.endswith("_bold"):
1253+
# Node to validate TR (and other scan parameters)
1254+
validate_bold_header = pe.Node(
1255+
Function(
1256+
input_names=["input_bold", "RawSource_bold"],
1257+
output_names=["output_bold"],
1258+
function=validate_outputs,
1259+
imports=[
1260+
"from CPAC.pipeline.utils import find_pixdim4, update_pixdim4"
1261+
],
1262+
),
1263+
name=f"validate_bold_header_{resource_idx}_{pipe_x}",
1264+
)
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raw_source, raw_out = self.get_data("bold")
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wf.connect([
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(nii_name, validate_bold_header, [

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