✨ Calculate gray matter volume and cortical thickness of ROIs in anatomical images

[maryamsadeghi357]

URL

https://neurostars.org/t/anatomical-preprocessing-with-different-atlas-rather-than-dkt-default-of-freesurfer-using-c-pac/34171

Related problem

I want to calculate the gray matter volume and cortical thickness of the ROIs defined by some atlases, like Craddock400, rather than the DKT atlas used by Freesurfer for the parcellation and processing of the anatomical images, because the preprocessed ABIDE data has already provided the mean time series of the ROIs of the Craddock400 atlas using C-PAC.

― Re: Anatomical preprocessing with different atlas rather than DKT default of Freesurfer using C-PAC

Proposed feature

Add workflows to calculate GMV and cortical thickness for specified ROIs.

Acceptance criteria

• C-PAC can calculate GMV
• C-PAC can calculate cortical thickness