🐛 C-PAC trying to use FSL `applywarp` with an ANTs warp file

[shnizzedy]

Describe the bug

Cmdline:
	applywarp --in=/ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/abcd-options/Site-CBIC/sub-NDARAB348EWR/working/pipeline_cpac-default-pipeline/cpac_pipeline_cpac-default-pipeline_sub-NDARAB348EWR_ses-1/anat_BET_skullstrip_67/sub-NDARAB348EWR_acq-HCP_run-01_T1w_resample_brain_mask.nii.gz --ref=/ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/abcd-options/Site-CBIC/sub-NDARAB348EWR/working/pipeline_cpac-default-pipeline/cpac_pipeline_cpac-default-pipeline_sub-NDARAB348EWR_ses-1/resampled_T1w-template/T1w-template/MNI152_T1_2mm_resample.nii.gz --out=/ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/abcd-options/Site-CBIC/sub-NDARAB348EWR/working/pipeline_cpac-default-pipeline/cpac_pipeline_cpac-default-pipeline_sub-NDARAB348EWR_ses-1/warp_T1mask_to_T1template_93/fsl_apply_warp/sub-NDARAB348EWR_acq-HCP_run-01_T1w_resample_brain_mask_warp.nii.gz --warp=/ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/abcd-options/Site-CBIC/sub-NDARAB348EWR/working/pipeline_cpac-default-pipeline/cpac_pipeline_cpac-default-pipeline_sub-NDARAB348EWR_ses-1/ANTS_T1_to_template_76/write_composite_xfm/from-T1w_to-template_mode-image_xfm.nii.gz --interp=nn
Stdout:

Stderr:
	An error occured while reading file: /ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/abcd-options/Site-CBIC/sub-NDARAB348EWR/working/pipeline_cpac-default-pipeline/cpac_pipeline_cpac-default-pipeline_sub-NDARAB348EWR_ses-1/ANTS_T1_to_template_76/write_composite_xfm/from-T1w_to-template_mode-image_xfm.nii.gz

To reproduce

Run C-PAC with an affected preconfig in ghcr.io/fcp-indi/c-pac@sha256:aa81a11455bc0f7b6a5a37275d719a9c5f9e532cec546f6a908a4f51e2138d27

Preconfig

• abcd-options
• default
• fmriprep-options
• fx-options

Expected behavior

applywarp is used for FSL files; antsApplyTransforms is used for ANTs files

Acceptance criteria

• warp / transforms are applied with appropriate tools instead of crashing

C-PAC version

v1.8.8.dev1

Container platform

Singularity, Docker