🐛 `KeyError: 'outputspec.output_image'`

[shnizzedy]

Describe the bug

Traceback (most recent call last):
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/plugins/linear.py", line 47, in run
    node.run(updatehash=updatehash)
  File "/code/CPAC/pipeline/nipype_pipeline_engine/engine.py", line 478, in run
    return super().run(updatehash)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 735, in _run_command
    result.outputs = clean_working_directory(
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/utils.py", line 1469, in clean_working_directory
    output_files.extend(walk_outputs(outputdict[output]))
KeyError: 'outputspec.output_image'

To reproduce

Run C-PAC with an affected preconfig in ghcr.io/fcp-indi/c-pac@sha256:aa81a11455bc0f7b6a5a37275d719a9c5f9e532cec546f6a908a4f51e2138d27

Preconfig

• benchmark-FNIRT
• ccs-options
• ndmg

Expected behavior

No mysterious connection errors in nipype Rename nodes.

Acceptance criteria

• No mysterious connection errors in nipype Rename nodes.

C-PAC version

v1.8.8.dev1

Container platform

Singularity, Docker

[shnizzedy]

Almost certainly the same root cause:

Node: cpac_pipeline_benchmark-FNIRT_sub-3699991_ses-1.nii_reg-3_desc-preproc-3_bold_374
Working directory: /ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/benchmark-FNIRT/KKI/sub-3699991/working/pipeline_benchmark-FNIRT/cpac_pipeline_benchmark-FNIRT_sub-3699991_ses-1/_scan_rest_run-1_acq-1/nii_reg-3_desc-preproc-3_bold_374

Node inputs:

format_string = sub-3699991_ses-1_task-rest_run-1_acq-1_reg-3_desc-preproc3_bold
in_file = /ocean/projects/med250004p/shared/regtests/regression_outputs_v1.8.8/benchmark-FNIRT/KKI/sub-3699991/working/pipeline_benchmark-FNIRT/cpac_pipeline_benchmark-FNIRT_sub-3699991_ses-1/nuisance_regression_space-native_reg-Regressor_3_246/_scan_rest_run-1_acq-1/nuisance_regression/residuals.nii.gz
keep_ext = True
parse_string = <undefined>
use_fullpath = False

Traceback (most recent call last):
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/plugins/linear.py", line 47, in run
    node.run(updatehash=updatehash)
  File "/code/CPAC/pipeline/nipype_pipeline_engine/engine.py", line 478, in run
    return super().run(updatehash)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 735, in _run_command
    result.outputs = clean_working_directory(
  File "/usr/share/fsl/6.0/lib/python3.10/site-packages/nipype/pipeline/engine/utils.py", line 1469, in clean_working_directory
    output_files.extend(walk_outputs(outputdict[output]))
KeyError: 'outputspec.residual_file_path'