From 03cf52f5a981faa5fe2d76ce5c08831ca72cedbf Mon Sep 17 00:00:00 2001 From: Connor Lane Date: Wed, 12 Oct 2022 17:12:33 -0400 Subject: [PATCH 1/2] :memo: clarify nuisance regressors in default pipeline --- CPAC/resources/configs/pipeline_config_default.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/CPAC/resources/configs/pipeline_config_default.yml b/CPAC/resources/configs/pipeline_config_default.yml index 3f277a1937..8ef5d1043b 100644 --- a/CPAC/resources/configs/pipeline_config_default.yml +++ b/CPAC/resources/configs/pipeline_config_default.yml @@ -1324,6 +1324,10 @@ nuisance_corrections: create_regressors: On # Select which nuisance signal corrections to apply + # If multiple groups of regressors are included (as in the default + # pipeline), each group will be applied to the data separately, resulting in + # one preprocessed bold series per group. E.g., `*-preproc-1_bold.nii.gz` + # and `*-preproc-2_bold.nii.gz` if there are two groups. Regressors: - Name: 'default' From c604a79cb3ad74479417898d8e5571375df15693 Mon Sep 17 00:00:00 2001 From: Connor Lane Date: Fri, 11 Nov 2022 12:14:34 -0500 Subject: [PATCH 2/2] update filename patterns in comment Co-authored-by: Jon Clucas --- CPAC/resources/configs/pipeline_config_default.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CPAC/resources/configs/pipeline_config_default.yml b/CPAC/resources/configs/pipeline_config_default.yml index 8ef5d1043b..80314c9cad 100644 --- a/CPAC/resources/configs/pipeline_config_default.yml +++ b/CPAC/resources/configs/pipeline_config_default.yml @@ -1326,8 +1326,8 @@ nuisance_corrections: # Select which nuisance signal corrections to apply # If multiple groups of regressors are included (as in the default # pipeline), each group will be applied to the data separately, resulting in - # one preprocessed bold series per group. E.g., `*-preproc-1_bold.nii.gz` - # and `*-preproc-2_bold.nii.gz` if there are two groups. + # one preprocessed bold series per group. E.g., `*_reg-default_desc-preproc_bold.nii.gz` + # and `*_reg-defaultNoGSR_desc-preproc_bold.nii.gz` if there are the two groups in the default preconfig. Regressors: - Name: 'default'