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@birajstha birajstha commented Feb 3, 2025

Fixes

Fixes #[issue number] by @[original issue author]
These additional code is causing no harm but may create un-necessary confusion. It may create wrong information in the tools that depends on this like blockbuster and resource-inventory. They are probably remains from refactoring of the code before and is safe to remove.

Description

Removed extra unused outputs from the list of freesurfer_abcd_preproc nodeblock outputs.

Technical details

These extra outputs are listed in the decorator as outputs but, the nodeblock does not output these resources.

These resources are generated from freesurfer ingress or from recon_all here and here.

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@shnizzedy shnizzedy left a comment

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I think this is probably the right approach, but alternatively we could add these outputs to cpac_outputs.tsv and to the outputs that the NodeBlock actually outputs. I don't know how many loose files from a recon-all run are useful though, and we can just recommend running FreeSurfer separately before running C-PAC for users that want all the FreeSurfer outputs.

@birajstha birajstha merged commit 4bdd6c4 into develop Feb 10, 2025
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3 participants