From f14f0a3601f12295c623fe1a4dac94ffe34e2166 Mon Sep 17 00:00:00 2001 From: "birajstha:construction_worker::penguin" Date: Mon, 3 Feb 2025 18:08:24 -0500 Subject: [PATCH 1/3] :heavy_minus_sign: removed extra unused outputs from the list --- CHANGELOG.md | 1 + CPAC/anat_preproc/anat_preproc.py | 18 ------------------ 2 files changed, 1 insertion(+), 18 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index be5ec4a43..7dd8592bb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -44,6 +44,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - `ABCD-HCP` - `fMRIPrep-LTS` - Typehinting support for Python < 3.10. +- Extra outputs listed in the `freesurfer_abcd_preproc`. ## [1.8.7] - 2024-05-03 diff --git a/CPAC/anat_preproc/anat_preproc.py b/CPAC/anat_preproc/anat_preproc.py index a561f8e07..eda6ecf62 100644 --- a/CPAC/anat_preproc/anat_preproc.py +++ b/CPAC/anat_preproc/anat_preproc.py @@ -2764,24 +2764,6 @@ def brain_extraction_temp_T2(wf, cfg, strat_pool, pipe_num, opt=None): "desc-restore-brain_T1w", "desc-ABCDpreproc_T1w", "pipeline-fs_desc-fast_biasfield", - "pipeline-fs_hemi-L_desc-surface_curv", - "pipeline-fs_hemi-R_desc-surface_curv", - "pipeline-fs_hemi-L_desc-surfaceMesh_pial", - "pipeline-fs_hemi-R_desc-surfaceMesh_pial", - "pipeline-fs_hemi-L_desc-surfaceMesh_smoothwm", - "pipeline-fs_hemi-R_desc-surfaceMesh_smoothwm", - "pipeline-fs_hemi-L_desc-surfaceMesh_sphere", - "pipeline-fs_hemi-R_desc-surfaceMesh_sphere", - "pipeline-fs_hemi-L_desc-surfaceMap_sulc", - "pipeline-fs_hemi-R_desc-surfaceMap_sulc", - "pipeline-fs_hemi-L_desc-surfaceMap_thickness", - "pipeline-fs_hemi-R_desc-surfaceMap_thickness", - "pipeline-fs_hemi-L_desc-surfaceMap_volume", - "pipeline-fs_hemi-R_desc-surfaceMap_volume", - "pipeline-fs_hemi-L_desc-surfaceMesh_white", - "pipeline-fs_hemi-R_desc-surfaceMesh_white", - "pipeline-fs_wmparc", - "freesurfer-subject-dir", ], ) def freesurfer_abcd_preproc(wf, cfg, strat_pool, pipe_num, opt=None): From f133aecffb97e75560e74cc85fd50562c2ec02bf Mon Sep 17 00:00:00 2001 From: birajstha <111654544+birajstha@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:59:01 -0600 Subject: [PATCH 2/3] Update CHANGELOG.md Co-authored-by: Jon Cluce --- CHANGELOG.md | 1 - 1 file changed, 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7297e4b4d..ac8787bdc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -52,7 +52,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - from outputs tsv. - ## [1.8.7] - 2024-05-03 ### Added From 06d4f28ccdaabd9f747d889f3707f6caedc86a5d Mon Sep 17 00:00:00 2001 From: birajstha <111654544+birajstha@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:59:11 -0600 Subject: [PATCH 3/3] Update CHANGELOG.md Co-authored-by: Jon Cluce --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ac8787bdc..fa2ece42f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -45,7 +45,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - `ABCD-HCP` - `fMRIPrep-LTS` - Typehinting support for Python < 3.10. -- Extra outputs listed in the `freesurfer_abcd_preproc`. +- Extra outputs listed in `freesurfer_abcd_preproc`. - Resource `space-template_desc-T1w_mask` - as output from FNIRT registration. - as inputs from Nodeblocks requesting it and, replaced with `space-template_desc-brain_mask`.