diff --git a/.github/Dockerfiles/AFNI.23.3.09-jammy.Dockerfile b/.github/Dockerfiles/AFNI.23.3.09-jammy.Dockerfile index 654146ec7..86fa68315 100644 --- a/.github/Dockerfiles/AFNI.23.3.09-jammy.Dockerfile +++ b/.github/Dockerfiles/AFNI.23.3.09-jammy.Dockerfile @@ -155,9 +155,9 @@ RUN apt-get clean \ && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /root/.cache/* FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ AFNI ${AFNI_VERSION} (${VERSION_NAME}) stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=AFNI /lib/x86_64-linux-gnu/ld* /lib/x86_64-linux-gnu/ COPY --from=AFNI /lib/x86_64-linux-gnu/lib*so* /lib/x86_64-linux-gnu/ COPY --from=AFNI /lib64/ld* /lib64/ diff --git a/.github/Dockerfiles/ANTs.2.4.3-jammy.Dockerfile b/.github/Dockerfiles/ANTs.2.4.3-jammy.Dockerfile index 03dd017b8..67cb8fdfa 100644 --- a/.github/Dockerfiles/ANTs.2.4.3-jammy.Dockerfile +++ b/.github/Dockerfiles/ANTs.2.4.3-jammy.Dockerfile @@ -30,8 +30,8 @@ RUN curl -sL https://github.com/ANTsX/ANTs/releases/download/v2.4.3/ants-2.4.3-u # Only keep what we need FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ ANTs 2.4.3 stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=ANTs /usr/lib/ants/ /usr/lib/ants/ COPY --from=ANTs /ants_template/ /ants_template/ diff --git a/.github/Dockerfiles/C-PAC.develop-jammy.Dockerfile b/.github/Dockerfiles/C-PAC.develop-jammy.Dockerfile index 2fa4ae4a2..1debc54c4 100644 --- a/.github/Dockerfiles/C-PAC.develop-jammy.Dockerfile +++ b/.github/Dockerfiles/C-PAC.develop-jammy.Dockerfile @@ -15,8 +15,8 @@ # You should have received a copy of the GNU Lesser General Public # License along with C-PAC. If not, see . FROM ghcr.io/fcp-indi/c-pac/stage-base:standard-v1.8.8.dev1 -LABEL org.opencontainers.image.description "Full C-PAC image" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.description="Full C-PAC image" +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # install C-PAC diff --git a/.github/Dockerfiles/C-PAC.develop-lite-jammy.Dockerfile b/.github/Dockerfiles/C-PAC.develop-lite-jammy.Dockerfile index 8e76675dc..20561f09a 100644 --- a/.github/Dockerfiles/C-PAC.develop-lite-jammy.Dockerfile +++ b/.github/Dockerfiles/C-PAC.develop-lite-jammy.Dockerfile @@ -15,8 +15,8 @@ # You should have received a copy of the GNU Lesser General Public # License along with C-PAC. If not, see . FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1 -LABEL org.opencontainers.image.description "Full C-PAC image without FreeSurfer" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.description="Full C-PAC image without FreeSurfer" +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # install C-PAC diff --git a/.github/Dockerfiles/FSL.6.0.6.5-jammy.Dockerfile b/.github/Dockerfiles/FSL.6.0.6.5-jammy.Dockerfile index e4ff0f9b2..112b0feda 100644 --- a/.github/Dockerfiles/FSL.6.0.6.5-jammy.Dockerfile +++ b/.github/Dockerfiles/FSL.6.0.6.5-jammy.Dockerfile @@ -101,9 +101,9 @@ ENTRYPOINT ["/bin/bash"] # # Only keep what we need FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ FSL 6.0.6.5 stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=FSL /lib/x86_64-linux-gnu /lib/x86_64-linux-gnu COPY --from=FSL /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu COPY --from=FSL /usr/bin /usr/bin diff --git a/.github/Dockerfiles/FSL.data.Dockerfile b/.github/Dockerfiles/FSL.data.Dockerfile index c7e0b593e..816b5e154 100644 --- a/.github/Dockerfiles/FSL.data.Dockerfile +++ b/.github/Dockerfiles/FSL.data.Dockerfile @@ -18,9 +18,9 @@ RUN mkdir -p /fsl_data/atlases/HarvardOxford fsl_data/standard/tissuepriors \ && chmod -R ugo+r /fsl_data/atlases FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ FSL data" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=FSL /fsl_data/standard fsl_data/standard COPY --from=FSL /fsl_data/atlases fsl_data/atlases diff --git a/.github/Dockerfiles/FreeSurfer.6.0.0-min.neurodocker-jammy.Dockerfile b/.github/Dockerfiles/FreeSurfer.6.0.0-min.neurodocker-jammy.Dockerfile index 811d20f61..ae6eac754 100644 --- a/.github/Dockerfiles/FreeSurfer.6.0.0-min.neurodocker-jammy.Dockerfile +++ b/.github/Dockerfiles/FreeSurfer.6.0.0-min.neurodocker-jammy.Dockerfile @@ -32,7 +32,7 @@ RUN apt-get clean && \ rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ FreeSurfer 6.0.0-min stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=FreeSurfer6 /usr/lib/freesurfer/ /usr/lib/freesurfer/ diff --git a/.github/Dockerfiles/ICA-AROMA.0.4.4-beta-jammy.Dockerfile b/.github/Dockerfiles/ICA-AROMA.0.4.4-beta-jammy.Dockerfile index 2759c529e..cc188c9aa 100644 --- a/.github/Dockerfiles/ICA-AROMA.0.4.4-beta-jammy.Dockerfile +++ b/.github/Dockerfiles/ICA-AROMA.0.4.4-beta-jammy.Dockerfile @@ -24,6 +24,6 @@ USER c-pac_user # Only keep what we need FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ ICA-AROMA 0.4.4-beta stage" COPY --from=ICA-AROMA /opt/ICA-AROMA/ /opt/ICA-AROMA/ diff --git a/.github/Dockerfiles/Ubuntu.jammy-non-free.Dockerfile b/.github/Dockerfiles/Ubuntu.jammy-non-free.Dockerfile index 301712677..5b8a65375 100644 --- a/.github/Dockerfiles/Ubuntu.jammy-non-free.Dockerfile +++ b/.github/Dockerfiles/Ubuntu.jammy-non-free.Dockerfile @@ -26,9 +26,9 @@ RUN apt-get update \ # use neurodebian runtime as parent image FROM neurodebian:jammy-non-free -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ Ubuntu Jammy base image" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC ARG BIDS_VALIDATOR_VERSION=1.14.6 \ DEBIAN_FRONTEND=noninteractive ENV TZ=America/New_York \ diff --git a/.github/Dockerfiles/base-lite.Dockerfile b/.github/Dockerfiles/base-lite.Dockerfile index 25c494942..e5c85d258 100644 --- a/.github/Dockerfiles/base-lite.Dockerfile +++ b/.github/Dockerfiles/base-lite.Dockerfile @@ -22,9 +22,9 @@ FROM ghcr.io/fcp-indi/c-pac/fsl:6.0.6.5-jammy as FSL FROM ghcr.io/fcp-indi/c-pac/ica-aroma:0.4.4-beta-jammy as ICA-AROMA FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ Standard software dependencies for C-PAC standard and lite images" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # Installing connectome-workbench diff --git a/.github/Dockerfiles/base-standard.Dockerfile b/.github/Dockerfiles/base-standard.Dockerfile index de7d3841e..0ba2cd515 100644 --- a/.github/Dockerfiles/base-standard.Dockerfile +++ b/.github/Dockerfiles/base-standard.Dockerfile @@ -17,9 +17,9 @@ FROM ghcr.io/fcp-indi/c-pac/freesurfer:6.0.0-min.neurodocker-jammy as FreeSurfer FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1 -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ Standard software dependencies for C-PAC standard images" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # Installing FreeSurfer diff --git a/.github/Dockerfiles/c3d.1.0.0-jammy.Dockerfile b/.github/Dockerfiles/c3d.1.0.0-jammy.Dockerfile index 2c1a7f1d8..9fbcdd238 100644 --- a/.github/Dockerfiles/c3d.1.0.0-jammy.Dockerfile +++ b/.github/Dockerfiles/c3d.1.0.0-jammy.Dockerfile @@ -36,7 +36,7 @@ RUN apt-get clean && \ rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* FROM scratch -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ c3d 1.0.0 (Jammy) stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC COPY --from=c3d /opt/c3d/ /opt/c3d/ diff --git a/.github/Dockerfiles/connectome-workbench.1.5.0.neurodebian-jammy.Dockerfile b/.github/Dockerfiles/connectome-workbench.1.5.0.neurodebian-jammy.Dockerfile index 2c958fd5d..1932efbc8 100644 --- a/.github/Dockerfiles/connectome-workbench.1.5.0.neurodebian-jammy.Dockerfile +++ b/.github/Dockerfiles/connectome-workbench.1.5.0.neurodebian-jammy.Dockerfile @@ -24,9 +24,9 @@ RUN apt-get update \ USER c-pac_user # FROM scratch -# LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +# LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ # connectome-workbench 1.5.0 stage" -# LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +# LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC # COPY --from=base /lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 /lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 # COPY --from=base /lib/x86_64-linux-gnu/libGL.so.1 /lib/x86_64-linux-gnu/libGL.so.1 # COPY --from=base /lib/x86_64-linux-gnu/libGLU.so.1 /lib/x86_64-linux-gnu/libGLU.so.1 diff --git a/.github/Dockerfiles/neuroparc.1.0-human-bionic.Dockerfile b/.github/Dockerfiles/neuroparc.1.0-human-bionic.Dockerfile index 2f64e0ae6..519093d3b 100644 --- a/.github/Dockerfiles/neuroparc.1.0-human-bionic.Dockerfile +++ b/.github/Dockerfiles/neuroparc.1.0-human-bionic.Dockerfile @@ -1,8 +1,8 @@ # using neurodebian runtime as parent image FROM neurodebian:bionic-non-free -LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ +LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \ neuroparc v1.0-human stage" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC ARG DEBIAN_FRONTEND=noninteractive diff --git a/Dockerfile b/Dockerfile index 2fa4ae4a2..1debc54c4 100644 --- a/Dockerfile +++ b/Dockerfile @@ -15,8 +15,8 @@ # You should have received a copy of the GNU Lesser General Public # License along with C-PAC. If not, see . FROM ghcr.io/fcp-indi/c-pac/stage-base:standard-v1.8.8.dev1 -LABEL org.opencontainers.image.description "Full C-PAC image" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.description="Full C-PAC image" +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # install C-PAC diff --git a/variant-lite.Dockerfile b/variant-lite.Dockerfile index 8e76675dc..20561f09a 100644 --- a/variant-lite.Dockerfile +++ b/variant-lite.Dockerfile @@ -15,8 +15,8 @@ # You should have received a copy of the GNU Lesser General Public # License along with C-PAC. If not, see . FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1 -LABEL org.opencontainers.image.description "Full C-PAC image without FreeSurfer" -LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC +LABEL org.opencontainers.image.description="Full C-PAC image without FreeSurfer" +LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC USER root # install C-PAC