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4 changes: 2 additions & 2 deletions .github/Dockerfiles/AFNI.23.3.09-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -155,9 +155,9 @@ RUN apt-get clean \
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /root/.cache/*

FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
AFNI ${AFNI_VERSION} (${VERSION_NAME}) stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
COPY --from=AFNI /lib/x86_64-linux-gnu/ld* /lib/x86_64-linux-gnu/
COPY --from=AFNI /lib/x86_64-linux-gnu/lib*so* /lib/x86_64-linux-gnu/
COPY --from=AFNI /lib64/ld* /lib64/
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/ANTs.2.4.3-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -30,8 +30,8 @@ RUN curl -sL https://github.com/ANTsX/ANTs/releases/download/v2.4.3/ants-2.4.3-u

# Only keep what we need
FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
ANTs 2.4.3 stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
COPY --from=ANTs /usr/lib/ants/ /usr/lib/ants/
COPY --from=ANTs /ants_template/ /ants_template/
4 changes: 2 additions & 2 deletions .github/Dockerfiles/C-PAC.develop-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@
# You should have received a copy of the GNU Lesser General Public
# License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
FROM ghcr.io/fcp-indi/c-pac/stage-base:standard-v1.8.8.dev1
LABEL org.opencontainers.image.description "Full C-PAC image"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.description="Full C-PAC image"
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# install C-PAC
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/C-PAC.develop-lite-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@
# You should have received a copy of the GNU Lesser General Public
# License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1
LABEL org.opencontainers.image.description "Full C-PAC image without FreeSurfer"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.description="Full C-PAC image without FreeSurfer"
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# install C-PAC
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/FSL.6.0.6.5-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -101,9 +101,9 @@ ENTRYPOINT ["/bin/bash"]

# # Only keep what we need
FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
FSL 6.0.6.5 stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
COPY --from=FSL /lib/x86_64-linux-gnu /lib/x86_64-linux-gnu
COPY --from=FSL /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu
COPY --from=FSL /usr/bin /usr/bin
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/FSL.data.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,9 @@ RUN mkdir -p /fsl_data/atlases/HarvardOxford fsl_data/standard/tissuepriors \
&& chmod -R ugo+r /fsl_data/atlases

FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
FSL data"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC

COPY --from=FSL /fsl_data/standard fsl_data/standard
COPY --from=FSL /fsl_data/atlases fsl_data/atlases
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ RUN apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
FreeSurfer 6.0.0-min stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
COPY --from=FreeSurfer6 /usr/lib/freesurfer/ /usr/lib/freesurfer/
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,6 @@ USER c-pac_user

# Only keep what we need
FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
ICA-AROMA 0.4.4-beta stage"
COPY --from=ICA-AROMA /opt/ICA-AROMA/ /opt/ICA-AROMA/
4 changes: 2 additions & 2 deletions .github/Dockerfiles/Ubuntu.jammy-non-free.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ RUN apt-get update \

# use neurodebian runtime as parent image
FROM neurodebian:jammy-non-free
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
Ubuntu Jammy base image"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
ARG BIDS_VALIDATOR_VERSION=1.14.6 \
DEBIAN_FRONTEND=noninteractive
ENV TZ=America/New_York \
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/base-lite.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,9 @@ FROM ghcr.io/fcp-indi/c-pac/fsl:6.0.6.5-jammy as FSL
FROM ghcr.io/fcp-indi/c-pac/ica-aroma:0.4.4-beta-jammy as ICA-AROMA

FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
Standard software dependencies for C-PAC standard and lite images"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# Installing connectome-workbench
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/base-standard.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -17,9 +17,9 @@
FROM ghcr.io/fcp-indi/c-pac/freesurfer:6.0.0-min.neurodocker-jammy as FreeSurfer

FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
Standard software dependencies for C-PAC standard images"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# Installing FreeSurfer
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/c3d.1.0.0-jammy.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ RUN apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

FROM scratch
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
c3d 1.0.0 (Jammy) stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
COPY --from=c3d /opt/c3d/ /opt/c3d/
Original file line number Diff line number Diff line change
Expand Up @@ -24,9 +24,9 @@ RUN apt-get update \
USER c-pac_user

# FROM scratch
# LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
# LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
# connectome-workbench 1.5.0 stage"
# LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
# LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
# COPY --from=base /lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 /lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
# COPY --from=base /lib/x86_64-linux-gnu/libGL.so.1 /lib/x86_64-linux-gnu/libGL.so.1
# COPY --from=base /lib/x86_64-linux-gnu/libGLU.so.1 /lib/x86_64-linux-gnu/libGLU.so.1
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4 changes: 2 additions & 2 deletions .github/Dockerfiles/neuroparc.1.0-human-bionic.Dockerfile
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# using neurodebian runtime as parent image
FROM neurodebian:bionic-non-free
LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
neuroparc v1.0-human stage"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC

ARG DEBIAN_FRONTEND=noninteractive

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4 changes: 2 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@
# You should have received a copy of the GNU Lesser General Public
# License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
FROM ghcr.io/fcp-indi/c-pac/stage-base:standard-v1.8.8.dev1
LABEL org.opencontainers.image.description "Full C-PAC image"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.description="Full C-PAC image"
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# install C-PAC
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4 changes: 2 additions & 2 deletions variant-lite.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@
# You should have received a copy of the GNU Lesser General Public
# License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.8.dev1
LABEL org.opencontainers.image.description "Full C-PAC image without FreeSurfer"
LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
LABEL org.opencontainers.image.description="Full C-PAC image without FreeSurfer"
LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/C-PAC
USER root

# install C-PAC
Expand Down