📝 More documentation / more links to documentation #134
Description
Related problem
Time series extraction: It is not clear at which step the time series is extracted,e.g. after minimal preprocessing, after nuisance regression, etc.?
Network centrality, ReHo, ALFF. Similar question, at which step these will be calculated?
Longitudinal template. No document for this option. I guess it is for the anatomical image across sessions?
Nuisance regression. 2-nuisance regression. What is the bandPass option here? Is it band-pass filtering on the regressor or just adds band-pass filtering to filter the data? Doesn’t matter if selected or not, it always shows as selected.
Nuisance regression - Regressor mask. No document for this option. are the options “csf_erosion_prop”, “csf_mask_erosion_mm”, “csf_erosion_mm” OR or AND? What does it mean “csf_erosion_prop”? Use the probability map to threshold the mask? Or it means that keep e.g. 0.6 proportion of a given tissue mask that defined in the earlier step? And, default 30mm for “GM_mask_erosion_mm” seems off, too big.
How can we select fork GSR and noGSR in the GUI? If can’t do it in GUI, could we have a note in GUI to tell the user how to fork this option in the config?
Originally posted by @TingsterX in #131 (comment)
Proposed feature
Add links from the GUI to relevant documentation
Acceptance criteria
- documentation clearly and easily accessible from GUI
Alternatives
Include relevant documentation in GUI
Additional context
There's a flowchart in the user documentation here that shows the sequence of steps that C-PAC follows.