Related problem
Not really a problem, but something that could be improved.
Currently we run exec:: directives in docstrings to generate workflow graphs for Nipype workflows. This works fine but displays a blank line of output.

Nipype has a Sphinx extension to build the graphs with less code in the docstrings and without the blank line of output displaying.
Proposed feature
Include 'nipype.sphinxext.plot_workflow' in https://github.com/FCP-INDI/fcp-indi.github.com/blob/565c9e02850f09a57fb2971fa4ed365819657d32/docs/_sources/conf.py#L118-L128
Replace exec:: workflow directives in docstrings with pithier workflow:: directives.
Related problem
Not really a problem, but something that could be improved.
Currently we run
exec::directives in docstrings to generate workflow graphs for Nipype workflows. This works fine but displays a blank line of output.Nipype has a Sphinx extension to build the graphs with less code in the docstrings and without the blank line of output displaying.
Proposed feature
Include
'nipype.sphinxext.plot_workflow'in https://github.com/FCP-INDI/fcp-indi.github.com/blob/565c9e02850f09a57fb2971fa4ed365819657d32/docs/_sources/conf.py#L118-L128Replace
exec::workflow directives in docstrings with pithierworkflow::directives.