New Orgs ot add to extended table

[cwoodside1278]

I noticed that some organisms from the BARDA priority list are still not in the argos core or extended tables. I have taken it upon myself to see if I can find some more to add.

[cwoodside1278]

I found these genomes that have ref seq for Nesseria sp.: https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=192066&annotated_only=true&refseq_annotation=true

• I have not run yet I have just found them

[cwoodside1278]

Eikenella sp. isn't in here either so:

• https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_001648425.1/
• https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_001811325.1/
• lots of eikenella samples https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=538

[cwoodside1278]

Ureaplasma urealyticum https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=2130

[cwoodside1278]

Blastomyces dermatitidis only has one genome with ref seq so: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000003525.1/

• ran it oct 3 2025 in the BARDA extended oct tfolder
• added it

[cwoodside1278]

So respiratory syntactical virus actually goes by Bovine orthopneumovirus. So we need to look at genomes for Bovine orthopneumovirus. There are nucleotides on NCBI and genomes that don't have refseq but its iffy

[cwoodside1278]

we don't have epstein barr virus, but the only one with refseq has no reads or biosample...

[cwoodside1278]

Cytomegalovirus I don't believe we have. There are lots of genomes with refseq data so thats good:

• https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=10358

[cwoodside1278]

Gave these to the interns and Miao to work on