popbayes/.github/workflows/R-CMD-check.yaml at 7d39df312734c3ac5f962229b3ab2f7dac3c6ab6 · FRBCesab/popbayes · GitHub

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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: R CMD Check

permissions: read-all

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macos-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest,   r: 'release'}
          - {os: ubuntu-latest,   r: 'oldrel-1'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - name: Cache JAGS (Windows)
        if: runner.os == 'Windows'
        uses: actions/cache@v3
        with:
          path: C:\Program Files\JAGS
          key: ${{ runner.os }}-jags-4.3.1
          restore-keys: |
            ${{ runner.os }}-jags-

      - name: Install JAGS (Windows)
        if: runner.os == 'Windows'
        shell: cmd
        run: |
          if not exist "C:\Program Files\JAGS\JAGS-4.3.1\bin\jags-terminal.exe" (
            echo "JAGS not found in cache, downloading and installing..."
            curl -o jags-installer.exe -L https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe/download
            jags-installer.exe /S
            del jags-installer.exe
          ) else (
            echo "JAGS found in cache, skipping installation"
          )

      - name: Install JAGS (macOS)
        if: runner.os == 'macOS'
        run : |
          brew install jags

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check

      - name: Install rjags
        run: Rscript -e 'install.packages("rjags", type = "source")'

      - uses: r-lib/actions/check-r-package@v2