error in creating the environment usng .yml file #259
Description
Describe the bug
I reached this step
conda env create -f conda_gpu.yml
Collecting torch-sparse<=0.6.15 (from -r /home/angelds/gt4sd-core/gpu_requirements.txt (line 2))
Using cached torch_sparse-0.6.15.tar.gz (2.1 MB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'error'
Pip subprocess error:
Running command git clone --filter=blob:none --quiet https://github.com/GT4SD/guacamol_baselines.git /tmp/pip-install-8xcekcvg/guacamol-baselines_ea93becd5409435a9e2cf383a2292688
Running command git checkout -q bca18ea84a06adda64adbdd78d94dfa96ad34066
Running command git clone --filter=blob:none --quiet https://github.com/GT4SD/molecule-generation /tmp/pip-install-8xcekcvg/molecule-generation_f2a3c088ef7041aa85e0328d4cbb1705
Running command git clone --filter=blob:none --quiet https://github.com/GT4SD/moses.git /tmp/pip-install-8xcekcvg/moses_f2681375f12d4167b43665b42f10a374
Running command git checkout -q a445b7d3ac8b24a16c6cd5e9f8d3176b0c6249b9
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_chemistry /tmp/pip-install-8xcekcvg/paccmann-chemistry_366a3b5f17b94ddc9cf1a83164cddcd7
Running command git checkout -q 706619bda0d6969c0769b78c50c090dea6e5ba15
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_generator /tmp/pip-install-8xcekcvg/paccmann-generator_35db0e800c514fa4a53a6acdc119dca4
Running command git checkout -q 3fa437e857c9f12cea97ae0c56f88604c6865a98
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_gp /tmp/pip-install-8xcekcvg/paccmann-gp_d0aa1918f84c417fbc4323b625a12e4d
Running command git checkout -q ebd76c8fbfd4a6a9a96836d4f450ba170e27a00a
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_omics /tmp/pip-install-8xcekcvg/paccmann-omics_5cf4657d377c4f57ac0ef2ae83fde425
Running command git checkout -q 501325338f06aa6e8731d9102bac175214d0c4cf
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_predictor /tmp/pip-install-8xcekcvg/paccmann-predictor_76bfd4e7fdd94afb83c6ce0b9bcf380b
Running command git checkout -q e51aa8f0e97e8b56df0a68890351f9338b4bab07
Running command git clone --filter=blob:none --quiet https://github.com/PaccMann/paccmann_datasets /tmp/pip-install-8xcekcvg/pytoda_d6a79ff11881489d8ed79d7bc4c7b792
Running command git checkout -q 22fa474805bdb673595fea987d554d94c02f2194
Running command git clone --filter=blob:none --quiet https://github.com/GT4SD/reinvent_models /tmp/pip-install-8xcekcvg/reinvent-models_fc18186e40004000bfa1c376bc56e6db
Running command git checkout -q 6eb81f2be468eecca7e63996618aa9307d9d8319
Running command git clone --filter=blob:none --quiet https://github.com/IBM/regression-transformer /tmp/pip-install-8xcekcvg/terminator_c6d0dbb8be5a4992bce2eb5a5c372e9c
Running command git checkout -b gt4sd --track origin/gt4sd
Switched to a new branch 'gt4sd'
branch 'gt4sd' set up to track 'origin/gt4sd'.
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [8 lines of output]
Traceback (most recent call last):
File "", line 2, in
File "", line 34, in
File "/tmp/pip-install-8xcekcvg/torch-sparse_46b1c4580b1948c88458bd68080e3479/setup.py", line 8, in
import torch
File "/home/angelds/.conda/envs/gt4sd/lib/python3.10/site-packages/torch/init.py", line 202, in
from torch._C import * # noqa: F403
ImportError: /home/angelds/.conda/envs/gt4sd/lib/python3.10/site-packages/torch/lib/libtorch_cpu.so: undefined symbol: iJIT_NotifyEvent
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
failed
CondaEnvException: Pip failed