Merge branch 'main' into ProcessOutputBuffer_to_SGPSymbiont

Author: Gabe-Rose

.github/workflows/CI.yml

@@ -32,6 +32,8 @@ jobs:
 
       - name: Upload coverage
         uses: codecov/codecov-action@v5
+        with:
+          exclude: source/catch,source/json,source/test
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 

.gitignore

@@ -1,3 +1,6 @@
+Data/
+_test/
+
 .DS_Store
 StatsConfig.cfg
 SymSettings.cfg

Makefile

@@ -2,12 +2,13 @@
 TEST_DIR := source/catch
 EMP_DIR := Empirical/include
 SGP_DIR := signalgp-lite/include
+CEREAL_DIR := signalgp-lite/third-party/cereal/include
 TAG_NUM_BITS = 32
 
 # Flags to use regardless of compiler
 VENDORIZE_EMP_FLAGS := -DUIT_VENDORIZE_EMP -DUIT_SUPPRESS_MACRO_INSEEP_WARNINGS
 COMPILE_TIME_ARGS := -DTAG_NUM_BITS=$(TAG_NUM_BITS)
-CFLAGS_all := -Wall -Wno-unused-function -std=c++20 $(COMPILE_TIME_ARGS) -I$(EMP_DIR)/ -I$(SGP_DIR)/ ${VENDORIZE_EMP_FLAGS}
+CFLAGS_all := -Wall -Wno-unused-function -std=c++20 $(COMPILE_TIME_ARGS) -I$(EMP_DIR)/ -I$(SGP_DIR)/ -I$(CEREAL_DIR)/ ${VENDORIZE_EMP_FLAGS}
 
 # Native compiler information
 CXX_nat := g++

codecov.yml

@@ -1,10 +1,11 @@
 ignore:
-  - "source/catch/**/*"
+  - "**/source/catch/**"
+  - "**/source/json/**"
   - "stats_scripts/**/*"
   - "web/**/*"
   - "source/Organism.h"
   - "source/*.test.cc"
   - "Empirical/**/*"
   - "coverage_source/**/*"
-  - "source/test/**/*"
+  - "**/source/test/**"
   - "signalgp-lite/**/*"