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Merge pull request #181 from Genentech/feature/huggingface-migration
Feature/huggingface migration
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README.md

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@@ -6,8 +6,19 @@ gReLU is a Python library to train, interpret, and apply deep learning models to
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![Flowchart](media/flowchart.jpg)
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## Notices
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[02-23-2026] Due to deprecated anonymous downloads from wandb (https://github.com/wandb/wandb/pull/10909) the gReLU model zoo has been migrated to huggingface (https://huggingface.co/collections/Genentech/grelu-model-zoo). In the next update, all functions to download models and datasets will connect to huggingface instead of wandb.
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## Breaking Changes in v1.1.0
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**Model Zoo Migration:** The gReLU model zoo has moved from Weights & Biases to [HuggingFace](https://huggingface.co/collections/Genentech/grelu-model-zoo). The `grelu.resources` API has changed:
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```python
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# Old API (wandb) - still available at grelu.resources.wandb but will be removed in future
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grelu.resources.load_model(project="human-atac-catlas", model_name="model")
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# New API (HuggingFace)
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grelu.resources.load_model(repo_id="Genentech/human-atac-catlas-model", filename="model.ckpt")
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```
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Browse the zoo at https://huggingface.co/collections/Genentech/grelu-model-zoo and see the [Model Zoo Tutorial](docs/tutorials/6_model_zoo.ipynb) for updated usage.
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## Installation
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docs/tutorials/1_inference.ipynb

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docs/tutorials/2_finetune.ipynb

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docs/tutorials/3_train.ipynb

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docs/tutorials/4_design.ipynb

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