Merge pull request #1088 from GenomicsStandardsConsortium/release/v6.2.2

Release v6.2.2

Author: turbomam

.zenodo.json

@@ -1,64 +1,99 @@
 {
   "title": "MIxS: Minimum Information about any (x) Sequence",
   "description": "The Minimum Information about any (x) Sequence (MIxS) specification is a set of community-developed standards for describing sequences and their associated metadata. MIxS provides checklists and environmental extensions to ensure that sequence data is accompanied by standardized contextual information, enabling data discovery, comparison, and integration across studies.",
-  "version": "6.2.1",
+  "version": "6.2.2",
   "license": {
     "id": "CC0-1.0"
   },
   "creators": [
     {
       "name": "Genomic Standards Consortium",
       "affiliation": "Genomic Standards Consortium"
-    }
-  ],
-  "contributors": [
+    },
     {
-      "name": "Schriml, Lynn",
-      "affiliation": "University of Maryland School of Medicine",
-      "orcid": "0000-0001-8910-9851",
-      "type": "ProjectLeader"
+      "name": "Hunter, Chris",
+      "orcid": "0000-0002-1335-0881"
     },
     {
-      "name": "Walls, Ramona",
-      "affiliation": "Critical Path Institute",
-      "orcid": "0000-0001-8815-0078",
-      "type": "ProjectMember"
+      "name": "Mungall, Chris",
+      "orcid": "0000-0002-6601-2165"
+    },
+    {
+      "name": "Meyer, Folker",
+      "orcid": "0000-0003-1112-2284"
+    },
+    {
+      "name": "Fellows Yates, James A.",
+      "orcid": "0000-0001-5585-6277"
+    },
+    {
+      "name": "Koehorst, Jasper",
+      "orcid": "0000-0001-8172-8981"
+    },
+    {
+      "name": "Schriml, Lynn M.",
+      "orcid": "0000-0001-8910-9851"
     },
     {
       "name": "Miller, Mark Andrew",
-      "affiliation": "Lawrence Berkeley National Laboratory",
-      "orcid": "0000-0001-9076-6066",
-      "type": "DataManager"
+      "orcid": "0000-0001-9076-6066"
     },
     {
       "name": "Smith, Montana",
-      "affiliation": "Lawrence Berkeley National Laboratory",
-      "orcid": "0000-0002-8683-0050",
-      "type": "DataManager"
+      "orcid": "0000-0002-8683-0050"
     },
     {
-      "name": "Moxon, Sierra",
-      "affiliation": "Lawrence Berkeley National Laboratory",
-      "orcid": "0000-0002-8719-7760",
-      "type": "DataManager"
+      "name": "Woollard, Peter",
+      "orcid": "0000-0002-7654-6902"
+    },
+    {
+      "name": "Buttigieg, Pier Luigi",
+      "orcid": "0000-0002-4366-3088"
+    },
+    {
+      "name": "Yilmaz, Pelin",
+      "orcid": "0000-0003-4724-323X"
+    },
+    {
+      "name": "Walls, Ramona",
+      "orcid": "0000-0001-8815-0078"
+    },
+    {
+      "name": "Kottmann, Renzo"
     },
     {
       "name": "Patil, Sujay",
-      "affiliation": "Lawrence Berkeley National Laboratory",
-      "orcid": "0000-0001-6142-1106",
-      "type": "DataManager"
+      "orcid": "0000-0001-6142-1106"
+    },
+    {
+      "name": "Moxon, Sierra",
+      "orcid": "0000-0002-8719-7760"
+    },
+    {
+      "name": "Paczian, Tobias"
     }
   ],
   "keywords": [
     "genomics",
     "metagenomics",
+    "metadata",
     "metadata standards",
-    "sequence data",
-    "environmental samples",
+    "standards",
+    "linkml",
+    "schema",
     "bioinformatics",
-    "LinkML"
+    "minimum information",
+    "checklist",
+    "reporting",
+    "sequence data",
+    "environmental samples"
   ],
   "related_identifiers": [
+    {
+      "identifier": "https://doi.org/10.1038/nbt.1823",
+      "relation": "isPublishedIn",
+      "scheme": "doi"
+    },
     {
       "identifier": "https://w3id.org/mixs",
       "relation": "isDocumentedBy",
@@ -80,6 +115,7 @@
       "identifier": "gensc"
     }
   ],
+  "language": "eng",
   "upload_type": "dataset",
   "access_right": "open"
 }

CITATION.cff

@@ -1,34 +1,65 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
 cff-version: 1.2.0
 title: "MIxS: Minimum Information about any (x) Sequence"
-message: "If you use MIxS in your research, please cite it using the metadata from this file."
+message: >-
+  If you use this dataset, please cite it using the metadata
+  from this file.
 type: dataset
 authors:
-  - name: "Genomic Standards Consortium"
-    website: "https://www.gensc.org/"
+  - family-names: Hunter
+    given-names: Chris
+    orcid: "https://orcid.org/0000-0002-1335-0881"
+  - family-names: Mungall
+    given-names: Chris
+    orcid: "https://orcid.org/0000-0002-6601-2165"
+  - family-names: Meyer
+    given-names: Folker
+    orcid: "https://orcid.org/0000-0003-1112-2284"
+  - family-names: Fellows Yates
+    given-names: James A.
+    orcid: "https://orcid.org/0000-0001-5585-6277"
+  - family-names: Koehorst
+    given-names: Jasper
+    orcid: "https://orcid.org/0000-0001-8172-8981"
   - family-names: Schriml
-    given-names: Lynn
-    affiliation: "University of Maryland School of Medicine"
-    orcid: "0000-0001-8910-9851"
-  - family-names: Walls
-    given-names: Ramona
-    affiliation: "Critical Path Institute"
-    orcid: "0000-0001-8815-0078"
+    given-names: Lynn M.
+    orcid: "https://orcid.org/0000-0001-8910-9851"
   - family-names: Miller
     given-names: Mark Andrew
-    affiliation: "Lawrence Berkeley National Laboratory"
-    orcid: "0000-0001-9076-6066"
+    orcid: "https://orcid.org/0000-0001-9076-6066"
   - family-names: Smith
     given-names: Montana
-    affiliation: "Lawrence Berkeley National Laboratory"
-    orcid: "0000-0002-8683-0050"
-  - family-names: Moxon
-    given-names: Sierra
-    affiliation: "Lawrence Berkeley National Laboratory"
-    orcid: "0000-0002-8719-7760"
+    orcid: "https://orcid.org/0000-0002-8683-0050"
+  - family-names: Woollard
+    given-names: Peter
+    orcid: "https://orcid.org/0000-0002-7654-6902"
+  - family-names: Buttigieg
+    given-names: Pier Luigi
+    orcid: "https://orcid.org/0000-0002-4366-3088"
+  - family-names: Yilmaz
+    given-names: Pelin
+    orcid: "https://orcid.org/0000-0003-4724-323X"
+  - family-names: Walls
+    given-names: Ramona
+    orcid: "https://orcid.org/0000-0001-8815-0078"
+  - family-names: Kottmann
+    given-names: Renzo
   - family-names: Patil
     given-names: Sujay
-    affiliation: "Lawrence Berkeley National Laboratory"
-    orcid: "0000-0001-6142-1106"
+    orcid: "https://orcid.org/0000-0001-6142-1106"
+  - family-names: Moxon
+    given-names: Sierra
+    orcid: "https://orcid.org/0000-0002-8719-7760"
+  - family-names: Paczian
+    given-names: Tobias
+  - name: "Genomic Standards Consortium"
+    website: "https://www.gensc.org"
+identifiers:
+  - type: url
+    value: "https://w3id.org/mixs"
+    description: "Permanent URL for MIxS"
 repository-code: "https://github.com/GenomicsStandardsConsortium/mixs"
 url: "https://w3id.org/mixs"
 abstract: >-
@@ -40,17 +71,20 @@ abstract: >-
 keywords:
   - genomics
   - metagenomics
+  - metadata
   - metadata standards
+  - standards
+  - linkml
+  - schema
+  - bioinformatics
+  - minimum information
+  - checklist
+  - reporting
   - sequence data
   - environmental samples
-  - bioinformatics
 license: CC0-1.0
-version: 6.2.1
+version: 6.2.2
 date-released: "2025-12-09"
-identifiers:
-  - type: url
-    value: "https://w3id.org/mixs"
-    description: "Permanent URL for MIxS"
 references:
   - type: article
     title: "The minimum information about a genome sequence (MIGS) specification"
@@ -82,3 +116,53 @@ references:
     start: 541
     end: 547
     doi: "10.1038/nbt1360"
+  - type: article
+    title: "Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications"
+    authors:
+      - family-names: Yilmaz
+        given-names: Pelin
+      - family-names: Kottmann
+        given-names: Renzo
+      - family-names: Field
+        given-names: Dawn
+      - family-names: Knight
+        given-names: Rob
+      - family-names: Cole
+        given-names: James R
+      - family-names: Amaral-Zettler
+        given-names: Linda
+      - family-names: Gilbert
+        given-names: Jack A
+      - family-names: Karsch-Mizrachi
+        given-names: Ilene
+      - family-names: Johnston
+        given-names: Anjanette
+      - family-names: Cochrane
+        given-names: Guy
+      - family-names: Vaughan
+        given-names: Robert
+      - family-names: Hunter
+        given-names: Christopher
+      - family-names: Park
+        given-names: Joonhong
+      - family-names: Morrison
+        given-names: Norman
+      - family-names: Rocca-Serra
+        given-names: Philippe
+      - family-names: Sterk
+        given-names: Peter
+      - family-names: Arumugam
+        given-names: Manimozhiyan
+      - family-names: Bailey
+        given-names: Mark
+      - family-names: Whetzel
+        given-names: Patricia L
+      - family-names: Garrity
+        given-names: George
+    journal: "Nature Biotechnology"
+    year: 2011
+    volume: 29
+    issue: 5
+    start: 415
+    end: 420
+    doi: "10.1038/nbt.1823"

assets/diff_results/releases.yaml

@@ -58,7 +58,7 @@ MIxS5:
   tag: MIxS5
   date: '2022-02-27'
   schema_yaml_path: null
-f57280a:
+5a78efa:
   owner: GenomicsStandardsConsortium
   repo: mixs
   tag: main