update codecovr

Author: Rafnuss

.github/workflows/test-coverage.yaml

@@ -8,6 +8,8 @@ on:
 
 name: test-coverage
 
+permissions: read-all
+
 jobs:
   test-coverage:
     runs-on: ubuntu-latest
@@ -23,23 +25,34 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v5
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results

README.Rmd

@@ -19,7 +19,7 @@ knitr::opts_chunk$set(
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7754457.svg)](https://doi.org/10.5281/zenodo.7754457)
 [![R-CMD-check](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml)
 [![pkgdown](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml)
-[![Codecov test coverage](https://codecov.io/gh/GeoPressure/GeoPressureR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/GeoPressure/GeoPressureR?branch=main)
+[![Codecov test coverage](https://codecov.io/gh/GeoPressure/GeoPressureR/graph/badge.svg)](https://app.codecov.io/gh/GeoPressure/GeoPressureR)
 [![lint](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml)
 [![format](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml)
 [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)

README.md

@@ -9,7 +9,7 @@
 [![R-CMD-check](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml)
 [![pkgdown](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml)
 [![Codecov test
-coverage](https://codecov.io/gh/GeoPressure/GeoPressureR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/GeoPressure/GeoPressureR?branch=main)
+coverage](https://codecov.io/gh/GeoPressure/GeoPressureR/graph/badge.svg)](https://app.codecov.io/gh/GeoPressure/GeoPressureR)
 [![lint](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml)
 [![format](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml)
 [![Lifecycle: