[BUG] SSLError workarounds?

[DSLituiev]

This seems to be a firewall related error, which has known workarounds for standard PIP install.

python -m quickumls.install . ~/repos/umls-files

Error:

python -m quickumls.install . ~/repos/umls-files
Determining if SpaCy for language "ENG" is installed...
SpaCy is not available! Attempting to download and install...
⚠ As of spaCy v3.0, shortcuts like 'en' are deprecated. Please use the
full pipeline package name 'en_core_web_sm' instead.
Traceback (most recent call last):
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/quickumls/install.py", line 130, in install_spacy
    spacy.load(SPACY_LANGUAGE_MAP[lang])
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/spacy/__init__.py", line 51, in load
    return util.load_model(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/spacy/util.py", line 426, in load_model
    raise IOError(Errors.E941.format(name=name, full=OLD_MODEL_SHORTCUTS[name]))  # type: ignore[index]
OSError: [E941] Can't find model 'en'. It looks like you're trying to load a model from a shortcut, which is obsolete as of spaCy v3.0. To load the model, use its full name instead:

nlp = spacy.load("en_core_web_sm")

For more details on the available models, see the models directory: https://spacy.io/models. If you want to create a blank model, use spacy.blank: nlp = spacy.blank("en")

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/connectionpool.py", line 703, in urlopen
    httplib_response = self._make_request(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/connectionpool.py", line 386, in _make_request
    self._validate_conn(conn)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1040, in _validate_conn
    conn.connect()
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/connection.py", line 414, in connect
    self.sock = ssl_wrap_socket(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/ssl.py", line 512, in wrap_socket
    return self.sslsocket_class._create(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/ssl.py", line 1070, in _create
    self.do_handshake()
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/ssl.py", line 1341, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:997)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/adapters.py", line 489, in send
    resp = conn.urlopen(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/connectionpool.py", line 785, in urlopen
    retries = retries.increment(
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/urllib3/util/retry.py", line 592, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /explosion/spacy-models/master/compatibility.json (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:997)')))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/runpy.py", line 196, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/runpy.py", line 86, in _run_code
    exec(code, run_globals)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/quickumls/install.py", line 233, in <module>
    main()
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/quickumls/install.py", line 171, in main
    install_spacy(opts.language)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/quickumls/install.py", line 134, in install_spacy
    spacy.cli.download(SPACY_LANGUAGE_MAP[lang])
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/spacy/cli/download.py", line 67, in download
    compatibility = get_compatibility()
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/spacy/cli/download.py", line 78, in get_compatibility
    r = requests.get(about.__compatibility__)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/sessions.py", line 587, in request
    resp = self.send(prep, **send_kwargs)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/sessions.py", line 701, in send
    r = adapter.send(request, **kwargs)
  File "/home/dlituiev/anaconda3/envs/spacy/lib/python3.10/site-packages/requests/adapters.py", line 563, in send
    raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /explosion/spacy-models/master/compatibility.json (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:997)')))

**Environment **

• OS: WSL Ubuntu
• QuickUMLS version [e.g. 1.4]
• UMLS version [e.g. 2022AA]
• Python 3.10
• spacy: spacy-3.3.1
• en_core_web_sm is installed

[DSLituiev]

it would be great to have --trusted-host argument

[DSLituiev]

also it seems like an antiquated requirement for en language instead of a specific spacy model like en_core_web_sm (see spacy warning in the log)

[DSLituiev]

I've patched it by replacing in constants.py: en -> en_core_web_sm