Merge pull request #2 from Global-Health-Engineering/dev

Document all five datasets in README and rebuild site

Author: seawaR

README.Rmd

@@ -69,7 +69,7 @@ file from the table below.
 
 ```{r, echo=FALSE, message=FALSE, warning=FALSE}
 
-extdata_path <- "https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/"
+extdata_path <- "https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/"
 
 read_csv("data-raw/dictionary.csv") |> 
   distinct(file_name) |> 

README.md

@@ -48,11 +48,11 @@ file from the table below.
 
 | dataset | CSV | XLSX |
 |:---|:---|:---|
-| experiment_setup | [Download CSV](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/experiment_setup.csv) | [Download XLSX](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/experiment_setup.xlsx) |
-| experiment_endpoint | [Download CSV](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/experiment_endpoint.csv) | [Download XLSX](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/experiment_endpoint.xlsx) |
-| faecal_measurements | [Download CSV](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/faecal_measurements.csv) | [Download XLSX](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/faecal_measurements.xlsx) |
-| inoculum_species | [Download CSV](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/inoculum_species.csv) | [Download XLSX](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/inoculum_species.xlsx) |
-| fungal_growth | [Download CSV](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/fungal_growth.csv) | [Download XLSX](https://github.com/openwashdata/fungalgrowth/raw/main/inst/extdata/fungal_growth.xlsx) |
+| experiment_setup | [Download CSV](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/experiment_setup.csv) | [Download XLSX](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/experiment_setup.xlsx) |
+| experiment_endpoint | [Download CSV](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/experiment_endpoint.csv) | [Download XLSX](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/experiment_endpoint.xlsx) |
+| faecal_measurements | [Download CSV](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/faecal_measurements.csv) | [Download XLSX](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/faecal_measurements.xlsx) |
+| inoculum_species | [Download CSV](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/inoculum_species.csv) | [Download XLSX](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/inoculum_species.xlsx) |
+| fungal_growth | [Download CSV](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/fungal_growth.csv) | [Download XLSX](https://github.com/global-health-engineering/fungalgrowth/raw/main/inst/extdata/fungal_growth.xlsx) |
 
 ## Data
 
@@ -81,7 +81,7 @@ experiment_setup |>
   gt::as_raw_html()
 ```
 
-<div id="grukwzbdpx" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<div id="xdbvyxdswg" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
   &#10;  <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
   <thead style="border-style: none;">
     <tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -263,7 +263,7 @@ experiment_endpoint |>
   gt::as_raw_html()
 ```
 
-<div id="ctejsvrfwl" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<div id="xwhedxugju" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
   &#10;  <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
   <thead style="border-style: none;">
     <tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -529,7 +529,7 @@ faecal_measurements |>
   gt::as_raw_html()
 ```
 
-<div id="sbjsuewjrz" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<div id="bnlfmwlniz" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
   &#10;  <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
   <thead style="border-style: none;">
     <tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -879,7 +879,7 @@ inoculum_species |>
   gt::as_raw_html()
 ```
 
-<div id="krkvooucif" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<div id="waaqcldybd" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
   &#10;  <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
   <thead style="border-style: none;">
     <tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -1003,7 +1003,7 @@ fungal_growth |>
   gt::as_raw_html()
 ```
 
-<div id="vremmdmtxg" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<div id="wczgtwzymr" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
   &#10;  <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
   <thead style="border-style: none;">
     <tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">