Skip to content

Commit e70a287

Browse files
seawaRseawaR
authored
Merge pull request #5 from Global-Health-Engineering/dev
Update data description in readme.
2 parents 281cfd6 + 4021bad commit e70a287

7 files changed

Lines changed: 50 additions & 35 deletions

File tree

‎README.Rmd‎

Lines changed: 7 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -85,7 +85,13 @@ read_csv("data-raw/dictionary.csv") |>
8585

8686
## Data
8787

88-
The package provides access to five datasets that together document the experimental design, the characterization of the inputs (faeces samples and fungal inocula), the time-series of mycelium growth observations, and the endpoint measurements at 14 days post inoculation. Each dataset can be loaded directly after attaching the package.
88+
The datasets capture a 14-day laboratory assay designed to study how fungal
89+
mycelium grows on human faeces and how that growth alters the substrate's
90+
physicochemical and microbial properties. Five datasets describe the assay end
91+
to end: the experimental setup, the characterization of the inputs (faeces
92+
samples and fungal inocula), the daily time series of mycelium growth, and the
93+
endpoint measurements recorded 14 days post inoculation. Each dataset is
94+
lazy-loaded and ready to use as soon as the package is attached.
8995

9096
```{r}
9197
library(fungalgrowth)

‎README.md‎

Lines changed: 13 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -56,11 +56,14 @@ file from the table below.
5656

5757
## Data
5858

59-
The package provides access to five datasets that together document the
60-
experimental design, the characterization of the inputs (faeces samples
61-
and fungal inocula), the time-series of mycelium growth observations,
62-
and the endpoint measurements at 14 days post inoculation. Each dataset
63-
can be loaded directly after attaching the package.
59+
The datasets capture a 14-day laboratory assay designed to study how
60+
fungal mycelium grows on human faeces and how that growth alters the
61+
substrate’s physicochemical and microbial properties. Five datasets
62+
describe the assay end to end: the experimental setup, the
63+
characterization of the inputs (faeces samples and fungal inocula), the
64+
daily time series of mycelium growth, and the endpoint measurements
65+
recorded 14 days post inoculation. Each dataset is lazy-loaded and ready
66+
to use as soon as the package is attached.
6467

6568
``` r
6669
library(fungalgrowth)
@@ -81,7 +84,7 @@ experiment_setup |>
8184
gt::as_raw_html()
8285
```
8386

84-
<div id="cqssnemhxb" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
87+
<div id="mermgoxyau" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
8588
&#10; <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
8689
<thead style="border-style: none;">
8790
<tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -263,7 +266,7 @@ experiment_endpoint |>
263266
gt::as_raw_html()
264267
```
265268

266-
<div id="knattlyuip" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
269+
<div id="qcbixusleg" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
267270
&#10; <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
268271
<thead style="border-style: none;">
269272
<tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -529,7 +532,7 @@ faecal_measurements |>
529532
gt::as_raw_html()
530533
```
531534

532-
<div id="ibxgonhluc" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
535+
<div id="jaicnmskvn" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
533536
&#10; <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
534537
<thead style="border-style: none;">
535538
<tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -879,7 +882,7 @@ inoculum_species |>
879882
gt::as_raw_html()
880883
```
881884

882-
<div id="ppeycgqatx" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
885+
<div id="jdcukhjqyz" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
883886
&#10; <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
884887
<thead style="border-style: none;">
885888
<tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">
@@ -1003,7 +1006,7 @@ fungal_growth |>
10031006
gt::as_raw_html()
10041007
```
10051008

1006-
<div id="apfqwivkxf" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
1009+
<div id="blvxyoleuq" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
10071010
&#10; <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false" style="-webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; display: table; border-collapse: collapse; line-height: normal; margin-left: auto; margin-right: auto; color: #333333; font-size: 16px; font-weight: normal; font-style: normal; background-color: #FFFFFF; width: auto; border-top-style: solid; border-top-width: 2px; border-top-color: #A8A8A8; border-right-style: none; border-right-width: 2px; border-right-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #A8A8A8; border-left-style: none; border-left-width: 2px; border-left-color: #D3D3D3;" bgcolor="#FFFFFF">
10081011
<thead style="border-style: none;">
10091012
<tr class="gt_col_headings" style="border-style: none; border-top-style: solid; border-top-width: 2px; border-top-color: #D3D3D3; border-bottom-style: solid; border-bottom-width: 2px; border-bottom-color: #D3D3D3; border-left-style: none; border-left-width: 1px; border-left-color: #D3D3D3; border-right-style: none; border-right-width: 1px; border-right-color: #D3D3D3;">

0 commit comments

Comments
 (0)