DataFxns/csharp/local/SequenceMotifSearch.yaml at e400bd4bbb0c17ef1a91a8c81f284f1f926cbe2e · Glysade/DataFxns · GitHub

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id: 70470634-68a8-4950-9d88-348bc19e3a1d
name: Sequence Motif Search
description: Creates boolean columns indicating the presence or absence of an input sequence motif in a sequence column - regular expressions are also supported.  A column illustrating the sequence and the identified motif locations is also created.
category: Biopolymer
version: 1.1.0
serviceName: SequenceMotifRegexSearch
serviceUri: glysade.csharp
executorId: Glysade.CSharpDataFxn
inputFields:
- control:
    id: sequenceColumn
    label: Select sequence column
    type: columnselect
    filters:
    - dataType: string
      contentType: chemical/x-sequence
    - dataType: binary
      contentType: chemical/x-genbank
    validationRules:
    - type: required
    multi: !!bool false
  request:
    id: sequenceColumn
    dataType: string
    selectorType: column
- control:
    id: columnName
    label: Output column name
    type: text
    validationRules:
    - type: required
      message: Enter a name for the output boolean column.
  request:
    id: columnName
    dataType: string
- control:
    id: featureName
    label: Motif name
    type: text
    validationRules:
    - type: required
      message: Enter a name to be used in annotating the motif.
  request:
    id: featureName
    dataType: string
- control:
    id: expression
    label: Sequence motif (or regular expression)
    type: text
    rows: !!int 1
    validationRules:
    - type: required
      message: A query sequence or regular expression must be entered.
  request:
    id: expression
    dataType: string
- control:
    id: ctrlColor
    label: Select color
    type: color
  request:
    id: ctrlColor
    dataType: string
    data: '#ffa500'
tags:
- color: '#AFC9E1'
  text: annotation
- color: '#337abc'
  text: sequence
updateBehavior: automatic
maximumOutputColumns: !!int 2
maximumOutputTables: !!int 0
chemistryFunction: !!bool false
outputFields:
- id: sequenceColumn
  name: Sequence column
  source: inputField
  type: default
- id: columnName
  name: Annotated sequence output column
  source: inputField
  type: default
- id: featureName
  name: Motif name
  source: inputField
  type: default
- id: expression
  name: Motif expression
  source: inputField
  type: default
- id: ctrlColor
  name: Color
  source: inputField
  type: color
allowedClients:
- Analyst
- WebPlayer
demoUrl:
limitBy: none
minimumChartsVersion: 4.4.0.0
confirmSubmit: